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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0028841 through 18771 annotations produced 1 hits



juvenile hormone acid methyltransferase (jhamt):

Annotation Number : CG17330
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0028841
Gbrowse : chr2L:16365918-16366977 (+) // 100.0 //
Probeset : 1628177_at
Accessions : protein= NP_609793;, nucleotide= NM_135949;
Interpro : 0008168 // methyltransferase activity // inferred from electronic annotation /// 0016740 // transferase activity // infe
FlyMine data for FBgn0028841.
VDRC has 2 RNAi stocks for FBgn0028841 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain301 114 of 410.60Up
Head276 284 of 4 9.70Up
Eye8 21 of 4 0.31Down
Thoracicoabdominal ganglion47 94 of 4 1.70None
Salivary gland10 40 of 4 0.36Down
Crop19 22 of 4 0.70None
Midgut13 30 of 4 0.50None
Tubule3 00 of 4 0.10Down
Hindgut38 44 of 4 1.30None
Heart1 00 of 4 0.05Down
Fat body4 30 of 4 0.16Down
Ovary1 00 of 4 0.10Down
Testis2 00 of 4 0.10Down
Male accessory glands213 1064 of 4 7.50None
Virgin spermatheca30 34 of 4 1.06None
Mated spermatheca37 74 of 4 1.30None
Adult carcass29 24 of 4 1.00None
Larval CNS23 143 of 4 0.84None
Larval Salivary gland2 10 of 4 0.08Down
Larval midgut1 00 of 4 0.04Down
Larval tubule1 00 of 4 0.00Down
Larval hindgut12 20 of 4 0.45None
Larval fat body8 30 of 4 0.30Down
Larval trachea0 00 of 4 0.03Down
Larval carcass1 00 of 4 0.07Down
S2 cells (growing)0 00 of 4 0.03Down
Whole fly28 53 of 4

Looking for FBgn0028841. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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