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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0028848 through 18771 annotations produced 2 hits



(CG7311):

Annotation Number : CG7311
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0028848
Gbrowse : chr2L:13708214-13709168 (+) // 100.0 //
Probeset : 1626067_a_at
Accessions : protein= NP_609667; /// NP_723830;, nucleotide= NM_135823; /// NM_165051;
Pathway : 0005739 // mitochondrion // inferred from sequence or structural similarity /// 0009331 // glycerol-3-phosphate dehydrog
Interpro : 0004368 // glycerol-3-phosphate dehydrogenase activity // inferred from sequence or structural similarity /// 0004368 //
FlyMine data for FBgn0028848.
BDGP gene expression has embryonic in situ data for BG:DS08249.2: 4 pix of staining in 1 body parts.
Homophila reports that CG7311 is a close match (2e-66) to human gene GPD2 (NP_001076581), a gene associated with {Diabetes mellitus, noninsulin-dependent}, 125853 (3).
VDRC has 2 RNAi stocks for FBgn0028848 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 00 of 4 0.00Down
Head4 20 of 4 0.10Down
Eye1 00 of 4 0.06Down
Thoracicoabdominal ganglion1 00 of 4 0.10Down
Salivary gland2 00 of 4 0.07Down
Crop2 20 of 4 0.10Down
Midgut8 10 of 4 0.30Down
Tubule2 00 of 4 0.10Down
Hindgut5 10 of 4 0.20Down
Heart2 10 of 4 0.09Down
Fat body3 20 of 4 0.12Down
Ovary3 00 of 4 0.10Down
Testis289 274 of 410.60Up
Male accessory glands4 30 of 4 0.20Down
Virgin spermatheca2 00 of 4 0.10Down
Mated spermatheca5 20 of 4 0.20Down
Adult carcass8 10 of 4 0.30Down
Larval CNS2 00 of 4 0.11Down
Larval Salivary gland6 10 of 4 0.23Down
Larval midgut4 10 of 4 0.15Down
Larval tubule4 20 of 4 0.20Down
Larval hindgut1 00 of 4 0.04Down
Larval fat body26 112 of 4 1.00None
Larval trachea1 00 of 4 0.06Down
Larval carcass2 10 of 4 0.10Down
S2 cells (growing)2 10 of 4 0.11Down
Whole fly27 14 of 4



(CG7311):

Annotation Number : CG7311
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0028848
Gbrowse : chr2L:13708214-13710592 (+) // 100.0 //
Probeset : 1628833_at
Accessions : protein= NP_609667; /// NP_723830;, nucleotide= NM_135823; /// NM_165051;
Pathway : 0005739 // mitochondrion // inferred from sequence or structural similarity /// 0009331 // glycerol-3-phosphate dehydrog
Interpro : 0004368 // glycerol-3-phosphate dehydrogenase activity // inferred from sequence or structural similarity /// 0004368 //
FlyMine data for FBgn0028848.
BDGP gene expression has embryonic in situ data for BG:DS08249.2: 4 pix of staining in 1 body parts.
Homophila reports that CG7311 is a close match (2e-66) to human gene GPD2 (NP_001076581), a gene associated with {Diabetes mellitus, noninsulin-dependent}, 125853 (3).
VDRC has 2 RNAi stocks for FBgn0028848 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 00 of 4 0.00Down
Head2 00 of 4 0.00Down
Eye0 00 of 4 0.00Down
Thoracicoabdominal ganglion0 00 of 4 0.00Down
Salivary gland9 40 of 4 0.09Down
Crop3 00 of 4 0.00Down
Midgut3 10 of 4 0.00Down
Tubule2 00 of 4 0.00Down
Hindgut1 00 of 4 0.00Down
Heart0 00 of 4 0.01Down
Fat body4 20 of 4 0.04Down
Ovary2 00 of 4 0.00Down
Testis1204 324 of 411.30Up
Male accessory glands3 10 of 4 0.00Down
Virgin spermatheca1 00 of 4 0.02Down
Mated spermatheca5 10 of 4 0.05Down
Adult carcass8 21 of 4 0.10Down
Larval CNS1 10 of 4 0.02Down
Larval Salivary gland5 10 of 4 0.05Down
Larval midgut1 00 of 4 0.02Down
Larval tubule2 00 of 4 0.00Down
Larval hindgut2 10 of 4 0.03Down
Larval fat body105 523 of 4 1.00None
Larval trachea1 10 of 4 0.01Down
Larval carcass2 10 of 4 0.02Down
S2 cells (growing)1 00 of 4 0.01Down
Whole fly106 34 of 4

Looking for FBgn0028848. 2 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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