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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0028853 through 18771 annotations produced 1 hits


Annotation Number : CG15263
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0028853
Gbrowse : chr2L:15285026-15285905 (+) // 100.0 //
Probeset : 1626435_at
Accessions : protein= NP_609748;, nucleotide= NM_135904;
FlyMine data for FBgn0028853.
VDRC has 2 RNAi stocks for FBgn0028853 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 00 of 4 0.20None
Head1 00 of 4 0.20None
Eye2 11 of 4 0.30None
Thoracicoabdominal ganglion2 00 of 4 0.30None
Salivary gland2 10 of 4 0.33None
Crop4 10 of 4 0.50None
Midgut1104 544 of 4137.20Up
Tubule3 00 of 4 0.40Down
Hindgut5 00 of 4 0.60None
Heart2 10 of 4 0.25None
Fat body1 00 of 4 0.13None
Ovary0 00 of 4 0.10None
Testis3 11 of 4 0.40None
Male accessory glands2 10 of 4 0.30None
Virgin spermatheca1 00 of 4 0.12None
Mated spermatheca1 00 of 4 0.12None
Adult carcass5 20 of 4 0.70None
Larval CNS1 10 of 4 0.25None
Larval Salivary gland3 10 of 4 0.38None
Larval midgut4 10 of 4 0.50None
Larval tubule1 10 of 4 0.20None
Larval hindgut3 10 of 4 0.39None
Larval fat body5 00 of 4 0.70None
Larval trachea2 20 of 4 0.31None
Larval carcass2 10 of 4 0.33None
S2 cells (growing)0 00 of 4 0.07None
Whole fly8 21 of 4

Looking for FBgn0028853. 1 entries matched from 18771, in 2 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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