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FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0028863 through 18771 annotations produced 2 hits



(CG4587):

Annotation Number : Stencil:2L:15654071:15649474:GENSCAN
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0028863
Gbrowse : chrUextra:37378-41975 (+) // 100.0 // /// chr2L:15671390-15675987 (-) // 100.0 // /// chr2L:15706387-15710984 (-) // 100.0 //
Probeset : 1640647_s_at
Accessions : protein= NP_001097163; /// NP_001097164;, nucleotide= NM_001103693; /// NM_001103694;
Pathway : 0016020 // membrane // inferred from electronic annotation
Interpro : 0005245 // voltage-gated calcium channel activity // inferred from sequence or structural similarity
FlyMine data for FBgn0028863.
TRiP has 1 RNAi stocks for FBgn0028863 available for purchase.
VDRC has 3 RNAi stocks for FBgn0028863 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain9 14 of 4 1.70None
Head2 00 of 4 0.40None
Eye2 00 of 4 0.43None
Thoracicoabdominal ganglion8 04 of 4 1.50None
Salivary gland11 21 of 4 1.93None
Crop6 03 of 4 1.10None
Midgut5 01 of 4 0.90None
Tubule5 00 of 4 0.90None
Hindgut6 13 of 4 1.10None
Heart2 00 of 4 0.35None
Fat body8 23 of 4 1.55None
Ovary1 00 of 4 0.30Down
Testis6 02 of 4 1.10None
Male accessory glands7 20 of 4 1.40None
Virgin spermatheca5 02 of 4 1.02None
Mated spermatheca7 12 of 4 1.38None
Adult carcass8 10 of 4 1.40None
Larval CNS3 11 of 4 0.69None
Larval Salivary gland4 10 of 4 0.74None
Larval midgut2 00 of 4 0.43None
Larval tubule5 00 of 4 1.00None
Larval hindgut4 01 of 4 0.86None
Larval fat body10 00 of 4 1.80Up
Larval trachea1 10 of 4 0.19Down
Larval carcass4 00 of 4 0.86None
S2 cells (growing)3 02 of 4 0.69None
Whole fly5 10 of 4



(CG4587):

Annotation Number : CG4587
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0028863
Gbrowse : chr2L:15647834-15652820 (-) // 100.0 //
Probeset : 1639537_at
Accessions : protein= NP_001097163; /// NP_001097164;, nucleotide= NM_001103693; /// NM_001103694;
Pathway : 0016020 // membrane // inferred from electronic annotation
Interpro : 0005245 // voltage-gated calcium channel activity // inferred from sequence or structural similarity
FlyMine data for FBgn0028863.
Homophila reports that CG4587 is a close match (1e-118) to human gene CACNA2D4;RCD4 (NP_758952), a gene associated with Retinal cone dystrophy 4, 610478 (3).
TRiP has 1 RNAi stocks for FBgn0028863 available for purchase.
VDRC has 3 RNAi stocks for FBgn0028863 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain69 44 of 417.90Up
Head11 21 of 4 3.00None
Eye12 13 of 4 3.19Up
Thoracicoabdominal ganglion41 64 of 410.60Up
Salivary gland6 20 of 4 1.54None
Crop4 10 of 4 1.20None
Midgut1 00 of 4 0.40None
Tubule1 00 of 4 0.50Down
Hindgut3 10 of 4 0.80None
Heart1 00 of 4 0.30None
Fat body4 30 of 4 1.27None
Ovary0 00 of 4 0.10None
Testis2 10 of 4 0.50None
Male accessory glands2 00 of 4 0.70None
Virgin spermatheca5 11 of 4 1.34None
Mated spermatheca6 22 of 4 1.72None
Adult carcass7 30 of 4 1.90None
Larval CNS13 34 of 4 3.54Up
Larval Salivary gland1 00 of 4 0.43None
Larval midgut0 00 of 4 0.23None
Larval tubule2 10 of 4 0.60None
Larval hindgut1 00 of 4 0.42None
Larval fat body0 00 of 4 0.20None
Larval trachea1 10 of 4 0.39None
Larval carcass0 00 of 4 0.23None
S2 cells (growing)80 14 of 420.69Up
Whole fly3 10 of 4

Looking for FBgn0028863. 2 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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