Flyatlas logo

FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
Home & Search
Batch/table Search
Tissues Search
BLASTP Search
About & FAQ
Top 50
Original data
Interesting meta-analysis
Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0028864 through 18771 annotations produced 2 hits



/// (CG18477 /// CG31780):

Annotation Number : CG31780
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0028864 /// FBgn0051780
Gbrowse : chr2L:15696042-15697667 (+) // 100.0 // /// chr2L:15661045-15662670 (+) // 100.0 //
Probeset : 1624619_s_at
Accessions : protein= NP_609763; /// NP_723920;, nucleotide= NM_135919; /// NM_165119;
Interpro : 0003824 // catalytic activity // inferred from electronic annotation /// 0004252 // serine-type endopeptidase activity /
FlyMine data for FBgn0028864 /// FBgn0051780.
Homophila reports that CG31780 is a close match (2e-12) to human gene LPA (NP_005568), a gene associated with [LPA deficiency, congenital] (3);{Coronary artery disease, susceptibility to} (1).


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 ± 00 of 4 0.10Down
Head37 ± 24 of 4 2.70Up
Eye13 ± 24 of 4 1.00None
Thoracicoabdominal ganglion2 ± 10 of 4 0.20Down
Salivary gland10 ± 40 of 4 0.78None
Crop6 ± 20 of 4 0.40Down
Midgut2 ± 00 of 4 0.20Down
Tubule4 ± 00 of 4 0.30Down
Hindgut5 ± 11 of 4 0.40Down
Heart13 ± 24 of 4 0.97None
Fat body24 ± 44 of 4 1.75Up
Ovary5 ± 00 of 4 0.40Down
Testis39 ± 24 of 4 2.80Up
Male accessory glands9 ± 31 of 4 0.70None
Virgin spermatheca62 ± 14 of 4 4.53Up
Mated spermatheca34 ± 84 of 4 2.50None
Adult carcass24 ± 24 of 4 1.80Up
Larval CNS3 ± 21 of 4 0.27Down
Larval Salivary gland18 ± 33 of 4 1.31None
Larval midgut4 ± 10 of 4 0.34Down
Larval tubule9 ± 11 of 4 0.70None
Larval hindgut28 ± 54 of 4 2.06None
Larval fat body1260 ± 1314 of 491.80Up
Larval trachea11 ± 63 of 4 0.82None
Larval carcass12 ± 12 of 4 0.94None
S2 cells (growing)3 ± 10 of 4 0.27Down
Whole fly13 ± 14 of 4



/// (CG18477 /// CG31780):

Annotation Number : CG31780
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0028864 /// FBgn0051780
Gbrowse : chr2L:15696177-15697929 (+) // 100.0 // /// chr2L:15661180-15662932 (+) // 100.0 //
Probeset : 1630346_at
Accessions : protein= NP_609763; /// NP_723920;, nucleotide= NM_135919; /// NM_165119;
Interpro : 0003824 // catalytic activity // inferred from electronic annotation /// 0004252 // serine-type endopeptidase activity /
FlyMine data for FBgn0028864 /// FBgn0051780.
Homophila reports that CG31780 is a close match (2e-12) to human gene LPA (NP_005568), a gene associated with [LPA deficiency, congenital] (3);{Coronary artery disease, susceptibility to} (1).


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 ± 00 of 4 1.80None
Head1 ± 00 of 4 1.10None
Eye1 ± 00 of 4 1.54None
Thoracicoabdominal ganglion0 ± 00 of 4 0.70None
Salivary gland1 ± 00 of 4 2.00Up
Crop1 ± 00 of 4 1.30None
Midgut1 ± 00 of 4 1.40None
Tubule1 ± 00 of 4 1.20None
Hindgut0 ± 00 of 4 0.80None
Heart1 ± 00 of 4 1.51Up
Fat body1 ± 00 of 4 1.16None
Ovary0 ± 00 of 4 0.70None
Testis1 ± 00 of 4 1.80None
Male accessory glands1 ± 00 of 4 1.60None
Virgin spermatheca1 ± 00 of 4 1.73None
Mated spermatheca0 ± 00 of 4 1.00None
Adult carcass1 ± 00 of 4 1.90None
Larval CNS1 ± 00 of 4 1.24None
Larval Salivary gland1 ± 00 of 4 1.16None
Larval midgut2 ± 00 of 4 3.14None
Larval tubule0 ± 00 of 4 0.80None
Larval hindgut1 ± 00 of 4 1.03None
Larval fat body1 ± 00 of 4 1.50None
Larval trachea4 ± 20 of 4 4.43None
Larval carcass0 ± 00 of 4 1.00None
S2 cells (growing)1 ± 00 of 4 1.70None
Whole fly0 ± 00 of 4

Looking for FBgn0028864. 2 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime