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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0028867 through 18771 annotations produced 1 hits



():

Annotation Number : CG15280
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0028867
Gbrowse : chr2L:14781714-14782733 (-) // 100.0 //
Probeset : 1636166_at
Accessions : protein= , nucleotide=
FlyMine data for FBgn0028867.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 ± 10 of 4 0.60None
Head2 ± 11 of 4 0.60None
Eye3 ± 10 of 4 0.87None
Thoracicoabdominal ganglion2 ± 00 of 4 0.80None
Salivary gland25 ± 63 of 4 7.10Up
Crop2 ± 00 of 4 0.80None
Midgut6 ± 10 of 4 1.90None
Tubule3 ± 00 of 4 1.00None
Hindgut5 ± 10 of 4 1.40None
Heart4 ± 10 of 4 1.24None
Fat body7 ± 40 of 4 2.11None
Ovary2 ± 10 of 4 0.60None
Testis2 ± 00 of 4 0.70None
Male accessory glands6 ± 10 of 4 1.70None
Virgin spermatheca4 ± 10 of 4 1.20None
Mated spermatheca5 ± 00 of 4 1.61None
Adult carcass11 ± 30 of 4 3.30None
Larval CNS3 ± 10 of 4 1.09None
Larval Salivary gland10 ± 22 of 4 2.81None
Larval midgut4 ± 10 of 4 1.19None
Larval tubule4 ± 11 of 4 1.30None
Larval hindgut5 ± 00 of 4 1.52None
Larval fat body5 ± 10 of 4 1.70None
Larval trachea5 ± 11 of 4 1.56None
Larval carcass8 ± 12 of 4 2.48Up
S2 cells (growing)1 ± 00 of 4 0.51None
Whole fly3 ± 10 of 4

Looking for FBgn0028867. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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