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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0028870 through 18771 annotations produced 1 hits


Annotation Number : CG4691
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0028870
Gbrowse : chr2L:14760766-14761933 (+) // 100.0 //
Probeset : 1631725_at
Accessions : protein= NP_609719;, nucleotide= NM_135875;
FlyMine data for FBgn0028870.
BDGP gene expression has embryonic in situ data for BG:DS06874.1: 4 pix of staining in 1 body parts.
BioGrid reports that CG4691 interacts with CG8942 .
VDRC has 2 RNAi stocks for FBgn0028870 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 10 of 4 0.00Down
Head5 20 of 4 0.00Down
Eye3 10 of 4 0.01Down
Thoracicoabdominal ganglion2 00 of 4 0.00Down
Salivary gland10 40 of 4 0.02Down
Crop10 10 of 4 0.00Down
Midgut4 10 of 4 0.00Down
Tubule6 10 of 4 0.00Down
Hindgut4 10 of 4 0.00Down
Heart3 11 of 4 0.01Down
Fat body5 30 of 4 0.01Down
Ovary2 00 of 4 0.00Down
Testis2794 1134 of 4 5.50Up
Male accessory glands14 20 of 4 0.00Down
Virgin spermatheca2 10 of 4 0.01Down
Mated spermatheca10 50 of 4 0.02Down
Adult carcass22 72 of 4 0.00Down
Larval CNS0 00 of 4 0.00Down
Larval Salivary gland2 00 of 4 0.01Down
Larval midgut4 20 of 4 0.01Down
Larval tubule5 20 of 4 0.00Down
Larval hindgut3 00 of 4 0.01Down
Larval fat body348 1964 of 4 0.70None
Larval trachea12 142 of 4 0.03Down
Larval carcass5 10 of 4 0.01Down
S2 cells (growing)3 10 of 4 0.01Down
Whole fly510 124 of 4

Looking for FBgn0028870. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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