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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0028884 through 18771 annotations produced 1 hits



(CG4892):

Annotation Number : CG4892
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0028884
Gbrowse : chr2L:16133507-16134412 (+) // 100.0 //
Probeset : 1623660_at
Accessions : protein= NP_609778;, nucleotide= NM_135934;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0028884.
TRiP has 1 RNAi stocks for FBgn0028884 available for purchase.
VDRC has 2 RNAi stocks for FBgn0028884 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain4 00 of 4 0.10Down
Head6 11 of 4 0.20Down
Eye4 10 of 4 0.15Down
Thoracicoabdominal ganglion5 20 of 4 0.20Down
Salivary gland11 51 of 4 0.38Down
Crop7 21 of 4 0.30Down
Midgut6 00 of 4 0.20Down
Tubule4 00 of 4 0.10Down
Hindgut5 10 of 4 0.20Down
Heart4 10 of 4 0.15Down
Fat body8 20 of 4 0.27Down
Ovary1 00 of 4 0.10Down
Testis327 104 of 410.80Up
Male accessory glands3 10 of 4 0.10Down
Virgin spermatheca5 10 of 4 0.19Down
Mated spermatheca8 12 of 4 0.27Down
Adult carcass6 20 of 4 0.20Down
Larval CNS3 10 of 4 0.13Down
Larval Salivary gland4 10 of 4 0.15Down
Larval midgut5 00 of 4 0.17Down
Larval tubule6 00 of 4 0.20Down
Larval hindgut5 11 of 4 0.18Down
Larval fat body54 204 of 4 1.80None
Larval trachea6 41 of 4 0.21Down
Larval carcass4 10 of 4 0.14Down
S2 cells (growing)4 00 of 4 0.14Down
Whole fly30 34 of 4

Looking for FBgn0028884. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime