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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0028886 through 18771 annotations produced 1 hits



(CG15279):

Annotation Number : CG15279
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0028886
Gbrowse : chr2L:14844995-14851749 (-) // 100.0 //
Probeset : 1632160_s_at
Accessions : protein= NP_001014484; /// NP_609726; /// NP_723885;, nucleotide= NM_001014484; /// NM_135882; /// NM_165093;
Pathway : 0005887 // integral to plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from e
Interpro : 0005326 // neurotransmitter transporter activity // inferred from sequence or structural similarity /// 0005328 // neuro
FlyMine data for FBgn0028886.
BDGP gene expression has embryonic in situ data for BG:DS03431.1: 4 pix of staining in 1 body parts.
Homophila reports that CG15279 is a close match (1e-43) to human gene HND;SLC6A19 (NP_001003841), a gene associated with Hartnup disorder, 234500 (3).
VDRC has 2 RNAi stocks for FBgn0028886 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain30 14 of 4 0.30Down
Head75 34 of 4 0.80None
Eye8 10 of 4 0.10Down
Thoracicoabdominal ganglion33 24 of 4 0.40Down
Salivary gland8 50 of 4 0.10Down
Crop334 114 of 4 3.70Up
Midgut14 12 of 4 0.20Down
Tubule2677 1374 of 429.30Up
Hindgut527 184 of 4 5.80Up
Heart14 23 of 4 0.16Down
Fat body31 283 of 4 0.34Down
Ovary5 01 of 4 0.10Down
Testis14 04 of 4 0.20Down
Male accessory glands3 10 of 4 0.00Down
Virgin spermatheca4 10 of 4 0.05Down
Mated spermatheca8 20 of 4 0.09Down
Adult carcass70 64 of 4 0.80None
Larval CNS1 10 of 4 0.02Down
Larval Salivary gland2 10 of 4 0.03Down
Larval midgut15 20 of 4 0.17Down
Larval tubule3108 684 of 434.00Up
Larval hindgut47 74 of 4 0.52Down
Larval fat body3 10 of 4 0.00Down
Larval trachea183 244 of 4 2.00Up
Larval carcass200 204 of 4 2.19Up
S2 cells (growing)4 10 of 4 0.04Down
Whole fly91 64 of 4

Looking for FBgn0028886. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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