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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0028887 through 18771 annotations produced 1 hits



(CG3491):

Annotation Number : CG3491
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0028887
Gbrowse : chr2L:14924734-14930256 (+) // 100.0 //
Probeset : 1640766_at
Accessions : protein= NP_609731;, nucleotide= NM_135887;
Interpro : 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from elect
FlyMine data for FBgn0028887.
VDRC has 2 RNAi stocks for FBgn0028887 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain0 00 of 4 0.20None
Head2 10 of 4 0.70None
Eye2 10 of 4 0.83None
Thoracicoabdominal ganglion1 00 of 4 0.40None
Salivary gland5 10 of 4 1.63None
Crop3 10 of 4 1.00None
Midgut2 10 of 4 0.70None
Tubule1 00 of 4 0.50Down
Hindgut1 00 of 4 0.60None
Heart0 00 of 4 0.26None
Fat body1 00 of 4 0.29None
Ovary1 00 of 4 0.30None
Testis101 24 of 430.00Up
Male accessory glands3 10 of 4 0.90None
Virgin spermatheca1 00 of 4 0.38None
Mated spermatheca1 00 of 4 0.33None
Adult carcass5 30 of 4 1.60None
Larval CNS0 00 of 4 0.28None
Larval Salivary gland2 00 of 4 0.60None
Larval midgut1 00 of 4 0.39None
Larval tubule1 00 of 4 0.50None
Larval hindgut1 00 of 4 0.30None
Larval fat body15 91 of 4 4.50None
Larval trachea3 20 of 4 0.96None
Larval carcass2 00 of 4 0.67None
S2 cells (growing)0 00 of 4 0.27None
Whole fly3 10 of 4

Looking for FBgn0028887. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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