FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0028888 through 18771 annotations produced 3 hits

chaoptic-like (CG4168):

Annotation Number : HDC02629
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0028888
Gbrowse : chr2L:15161421-15162231 (-) // 100.0 //
Probeset : 1623118_s_at
Accessions : protein= NP_609740;, nucleotide= NM_135896;
Interpro : 0004930 // G-protein coupled receptor activity // inferred from sequence or structural similarity /// 0005515 // protein
FlyMine data for FBgn0028888.
TRiP has 1 RNAi stocks for FBgn0028888 available for purchase.
VDRC has 1 RNAi stocks for FBgn0028888 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	28 ± 3	0 of 4	1.10	None
Head	56 ± 4	0 of 4	2.10	Up
Eye	11 ± 2	0 of 4	0.43	Down
Thoracicoabdominal ganglion	20 ± 3	0 of 4	0.80	None
Salivary gland	100 ± 10	0 of 4	3.82	Up
Crop	29 ± 1	0 of 4	1.10	None
Midgut	35 ± 2	0 of 4	1.40	None
Tubule	12 ± 1	0 of 4	0.50	Down
Hindgut	35 ± 2	0 of 4	1.30	None
Heart	4 ± 2	0 of 4	0.17	Down
Fat body	46 ± 11	0 of 4	1.75	Up
Ovary	9 ± 0	0 of 4	0.30	Down
Testis	4 ± 1	0 of 4	0.20	Down
Male accessory glands	28 ± 3	0 of 4	1.10	None
Virgin spermatheca	31 ± 7	0 of 4	1.19	None
Mated spermatheca	41 ± 5	0 of 4	1.56	None
Adult carcass	60 ± 18	0 of 4	2.30	None
Larval CNS	12 ± 3	0 of 4	0.46	Down
Larval Salivary gland	19 ± 4	0 of 4	0.72	None
Larval midgut	20 ± 0	0 of 4	0.79	None
Larval tubule	36 ± 1	0 of 4	1.40	Up
Larval hindgut	23 ± 4	0 of 4	0.88	None
Larval fat body	17 ± 4	0 of 4	0.70	None
Larval trachea	11 ± 13	0 of 4	0.43	None
Larval carcass	35 ± 5	0 of 4	1.34	None
S2 cells (growing)	20 ± 0	0 of 4	0.79	None
Whole fly	26 ± 3	0 of 4

chaoptic-like (CG4168):

Annotation Number : CG4168
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0028888
Gbrowse : chr2L:15162106-15178320 (-) // 100.0 //
Probeset : 1640030_at
Accessions : protein= NP_609740;, nucleotide= NM_135896;
Interpro : 0004930 // G-protein coupled receptor activity // inferred from sequence or structural similarity /// 0005515 // protein
FlyMine data for FBgn0028888.
Homophila reports that CG4168 is a close match (2e-13) to human gene ARMD10;TLR4 (NP_612564), a gene associated with Endotoxin hyporesponsiveness (3);{Colorectal cancer, susceptibility to}, 114500 (3);{Longevity, susceptibility to}, 152430 (3);{Macular degeneration, age-related, 10}, 611488 (3).
BioGrid reports that CG4168 interacts with CG5127 CG5372 CG5893 CG6509 CG9927 CG9986 .
TRiP has 1 RNAi stocks for FBgn0028888 available for purchase.
VDRC has 1 RNAi stocks for FBgn0028888 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	312 ± 17	4 of 4	25.20	Up
Head	73 ± 2	4 of 4	6.00	Up
Eye	79 ± 5	4 of 4	6.40	Up
Thoracicoabdominal ganglion	184 ± 4	4 of 4	14.90	Up
Salivary gland	20 ± 3	1 of 4	1.62	None
Crop	5 ± 1	1 of 4	0.40	Down
Midgut	2 ± 0	0 of 4	0.20	Down
Tubule	5 ± 0	0 of 4	0.40	Down
Hindgut	4 ± 1	0 of 4	0.30	Down
Heart	5 ± 0	1 of 4	0.47	Down
Fat body	18 ± 4	4 of 4	1.53	None
Ovary	1 ± 0	0 of 4	0.10	Down
Testis	2 ± 0	0 of 4	0.20	Down
Male accessory glands	7 ± 2	2 of 4	0.60	None
Virgin spermatheca	13 ± 1	4 of 4	1.06	None
Mated spermatheca	10 ± 1	3 of 4	0.88	None
Adult carcass	4 ± 1	1 of 4	0.30	Down
Larval CNS	106 ± 17	4 of 4	8.64	Up
Larval Salivary gland	2 ± 0	1 of 4	0.16	Down
Larval midgut	1 ± 0	0 of 4	0.09	Down
Larval tubule	7 ± 1	1 of 4	0.60	Down
Larval hindgut	4 ± 0	1 of 4	0.34	Down
Larval fat body	3 ± 1	0 of 4	0.30	Down
Larval trachea	4 ± 4	1 of 4	0.34	Down
Larval carcass	4 ± 1	1 of 4	0.40	Down
S2 cells (growing)	2 ± 0	0 of 4	0.19	Down
Whole fly	12 ± 1	4 of 4

chaoptic-like (CG4168):

Annotation Number : HDC02629
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0028888
Gbrowse : chr2L:15161421-15162231 (-) // 100.0 //
Probeset : 1629110_x_at
Accessions : protein= NP_609740;, nucleotide= NM_135896;
Interpro : 0004930 // G-protein coupled receptor activity // inferred from sequence or structural similarity /// 0005515 // protein
FlyMine data for FBgn0028888.
TRiP has 1 RNAi stocks for FBgn0028888 available for purchase.
VDRC has 1 RNAi stocks for FBgn0028888 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	32 ± 3	3 of 4	0.60	Down
Head	81 ± 6	4 of 4	1.40	Up
Eye	24 ± 2	3 of 4	0.42	Down
Thoracicoabdominal ganglion	40 ± 4	1 of 4	0.70	None
Salivary gland	86 ± 5	1 of 4	1.51	Up
Crop	64 ± 2	3 of 4	1.10	None
Midgut	74 ± 3	0 of 4	1.30	None
Tubule	60 ± 2	4 of 4	1.10	None
Hindgut	98 ± 8	4 of 4	1.70	Up
Heart	35 ± 1	4 of 4	0.62	Down
Fat body	76 ± 8	4 of 4	1.34	Up
Ovary	23 ± 3	0 of 4	0.40	Down
Testis	35 ± 2	3 of 4	0.60	Down
Male accessory glands	38 ± 2	1 of 4	0.70	Down
Virgin spermatheca	72 ± 8	3 of 4	1.27	None
Mated spermatheca	70 ± 5	3 of 4	1.24	None
Adult carcass	96 ± 9	2 of 4	1.70	Up
Larval CNS	26 ± 3	0 of 4	0.47	Down
Larval Salivary gland	43 ± 7	0 of 4	0.76	None
Larval midgut	67 ± 5	0 of 4	1.18	None
Larval tubule	67 ± 3	2 of 4	1.20	None
Larval hindgut	57 ± 4	3 of 4	1.00	None
Larval fat body	36 ± 3	2 of 4	0.60	Down
Larval trachea	66 ± 15	3 of 4	1.16	None
Larval carcass	89 ± 5	2 of 4	1.58	Up
S2 cells (growing)	53 ± 3	0 of 4	0.95	None
Whole fly	57 ± 6	4 of 4

Looking for FBgn0028888. 3 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720