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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0028897 through 18771 annotations produced 1 hits



(CG4935):

Annotation Number : CG4935
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0028897
Gbrowse : chr2L:16262122-16263483 (+) // 100.0 //
Probeset : 1630373_at
Accessions : protein= NP_609782;, nucleotide= NM_135938;
Pathway : via spliceosome // inferred by curator"
Interpro : 0071011 // precatalytic spliceosome // inferred from direct assay /// 0071013 // catalytic step 2 spliceosome // inferre
FlyMine data for FBgn0028897.
BDGP gene expression has embryonic in situ data for BG:DS02740.2: 6 pix of staining in 1 body parts.
Homophila reports that CG4935 is a close match (4e-13) to human gene LIS1;PAFAH1B1 (NP_000421), a gene associated with Lissencephaly-1, 607432 (3);Subcortical laminar heterotopia (3).
VDRC has 2 RNAi stocks for FBgn0028897 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain47 14 of 4 0.90None
Head20 14 of 4 0.40Down
Eye22 14 of 4 0.41Down
Thoracicoabdominal ganglion39 34 of 4 0.70Down
Salivary gland18 50 of 4 0.34Down
Crop14 14 of 4 0.30Down
Midgut11 20 of 4 0.20Down
Tubule28 13 of 4 0.50Down
Hindgut15 14 of 4 0.30Down
Heart12 12 of 4 0.23Down
Fat body13 52 of 4 0.25Down
Ovary90 14 of 4 1.70Up
Testis201 84 of 4 3.70Up
Male accessory glands12 32 of 4 0.20Down
Virgin spermatheca16 14 of 4 0.30Down
Mated spermatheca13 14 of 4 0.24Down
Adult carcass16 10 of 4 0.30Down
Larval CNS47 14 of 4 0.86Down
Larval Salivary gland15 23 of 4 0.28Down
Larval midgut16 22 of 4 0.30Down
Larval tubule19 13 of 4 0.30Down
Larval hindgut15 24 of 4 0.27Down
Larval fat body35 94 of 4 0.70None
Larval trachea30 34 of 4 0.56Down
Larval carcass14 14 of 4 0.27Down
S2 cells (growing)32 14 of 4 0.60Down
Whole fly54 24 of 4

Looking for FBgn0028897. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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