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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0028899 through 18771 annotations produced 1 hits



(CG31817):

Annotation Number : CG31817
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0028899
Gbrowse : chr2L:16330622-16337807 (-) // 100.0 //
Probeset : 1636703_at
Accessions : protein= NP_723962;, nucleotide= NM_165153;
FlyMine data for FBgn0028899.
VDRC has 3 RNAi stocks for FBgn0028899 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain16 ± 04 of 4 0.50Down
Head3 ± 10 of 4 0.10Down
Eye4 ± 10 of 4 0.14Down
Thoracicoabdominal ganglion26 ± 24 of 4 0.90None
Salivary gland16 ± 20 of 4 0.52Down
Crop9 ± 12 of 4 0.30Down
Midgut7 ± 10 of 4 0.20Down
Tubule6 ± 01 of 4 0.20Down
Hindgut8 ± 13 of 4 0.30Down
Heart4 ± 00 of 4 0.16Down
Fat body8 ± 31 of 4 0.26Down
Ovary3 ± 00 of 4 0.10Down
Testis397 ± 144 of 412.60Up
Male accessory glands12 ± 32 of 4 0.40Down
Virgin spermatheca12 ± 14 of 4 0.41Down
Mated spermatheca9 ± 13 of 4 0.28Down
Adult carcass9 ± 10 of 4 0.30Down
Larval CNS7 ± 34 of 4 0.24Down
Larval Salivary gland7 ± 20 of 4 0.25Down
Larval midgut8 ± 11 of 4 0.25Down
Larval tubule10 ± 03 of 4 0.30Down
Larval hindgut7 ± 12 of 4 0.24Down
Larval fat body27 ± 104 of 4 0.90None
Larval trachea8 ± 22 of 4 0.25Down
Larval carcass11 ± 32 of 4 0.35Down
S2 cells (growing)5 ± 12 of 4 0.19Down
Whole fly31 ± 24 of 4

Looking for FBgn0028899. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime