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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0028901 through 18771 annotations produced 1 hits



(CG18109):

Annotation Number : CG18109
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0028901
Gbrowse : chr2L:15784254-15790050 (+) // 100.0 //
Probeset : 1634391_at
Accessions : protein= NP_723933;, nucleotide= NM_165132;
Pathway : 0000922 // spindle pole // inferred from electronic annotation /// 0005815 // microtubule organizing center // inferred
FlyMine data for FBgn0028901.
VDRC has 1 RNAi stocks for FBgn0028901 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 ± 02 of 4 0.10Down
Head4 ± 11 of 4 0.10Down
Eye2 ± 00 of 4 0.07Down
Thoracicoabdominal ganglion3 ± 10 of 4 0.10Down
Salivary gland18 ± 32 of 4 0.48Down
Crop6 ± 02 of 4 0.20Down
Midgut2 ± 00 of 4 0.10Down
Tubule4 ± 00 of 4 0.10Down
Hindgut3 ± 00 of 4 0.10Down
Heart5 ± 00 of 4 0.13Down
Fat body11 ± 44 of 4 0.29Down
Ovary1 ± 01 of 4 0.10Down
Testis564 ± 164 of 414.80Up
Male accessory glands3 ± 10 of 4 0.10Down
Virgin spermatheca3 ± 11 of 4 0.10Down
Mated spermatheca8 ± 12 of 4 0.21Down
Adult carcass7 ± 10 of 4 0.20Down
Larval CNS6 ± 43 of 4 0.18Down
Larval Salivary gland4 ± 11 of 4 0.12Down
Larval midgut4 ± 11 of 4 0.10Down
Larval tubule6 ± 03 of 4 0.20Down
Larval hindgut4 ± 03 of 4 0.12Down
Larval fat body75 ± 413 of 4 2.00None
Larval trachea2 ± 21 of 4 0.06Down
Larval carcass4 ± 12 of 4 0.12Down
S2 cells (growing)2 ± 00 of 4 0.06Down
Whole fly38 ± 44 of 4

Looking for FBgn0028901. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime