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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0028916 through 18771 annotations produced 2 hits



(CG33090):

Annotation Number : CG33090
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0028916
Gbrowse : chr2L:14334159-14345802 (+) // 100.0 //
Probeset : 1636816_s_at
Accessions : protein= NP_788055;, nucleotide= NM_176041;
Pathway : 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic an
Interpro : "0003824 // catalytic activity // inferred from electronic annotation /// 0004348 // glucosylceramidase activity // infe
FlyMine data for FBgn0028916.
TRiP has 1 RNAi stocks for FBgn0028916 available for purchase.
VDRC has 5 RNAi stocks for FBgn0028916 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain444 124 of 4 3.10Up
Head132 54 of 4 0.90None
Eye85 104 of 4 0.59Down
Thoracicoabdominal ganglion458 104 of 4 3.20Up
Salivary gland250 274 of 4 1.74Up
Crop48 44 of 4 0.30Down
Midgut60 44 of 4 0.40Down
Tubule350 704 of 4 2.40Up
Hindgut33 14 of 4 0.20Down
Heart37 24 of 4 0.26Down
Fat body46 104 of 4 0.32Down
Ovary246 64 of 4 1.70Up
Testis56 24 of 4 0.40Down
Male accessory glands14 11 of 4 0.10Down
Virgin spermatheca45 24 of 4 0.31Down
Mated spermatheca51 24 of 4 0.36Down
Adult carcass40 14 of 4 0.30Down
Larval CNS211 234 of 4 1.46Up
Larval Salivary gland55 84 of 4 0.39Down
Larval midgut189 174 of 4 1.31None
Larval tubule64 34 of 4 0.40Down
Larval hindgut61 34 of 4 0.43Down
Larval fat body24 14 of 4 0.20Down
Larval trachea22 34 of 4 0.16Down
Larval carcass27 24 of 4 0.19Down
S2 cells (growing)86 24 of 4 0.60Down
Whole fly144 144 of 4



(CG33090):

Annotation Number : S.C2L001936
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0028916
Gbrowse : chr2L:14341355-14343665 (+) // 100.0 //
Probeset : 1633279_s_at
Accessions : protein= NP_788055;, nucleotide= NM_176041;
Pathway : 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic an
Interpro : "0003824 // catalytic activity // inferred from electronic annotation /// 0004348 // glucosylceramidase activity // infe
FlyMine data for FBgn0028916.
TRiP has 1 RNAi stocks for FBgn0028916 available for purchase.
VDRC has 5 RNAi stocks for FBgn0028916 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain49 24 of 4 2.10Up
Head17 24 of 4 0.70None
Eye4 10 of 4 0.18Down
Thoracicoabdominal ganglion37 74 of 4 1.60None
Salivary gland17 40 of 4 0.74None
Crop10 11 of 4 0.40Down
Midgut10 10 of 4 0.40Down
Tubule9 10 of 4 0.40Down
Hindgut11 20 of 4 0.50Down
Heart3 10 of 4 0.16Down
Fat body15 51 of 4 0.64None
Ovary24 24 of 4 1.10None
Testis9 01 of 4 0.40Down
Male accessory glands5 20 of 4 0.30Down
Virgin spermatheca8 02 of 4 0.35Down
Mated spermatheca5 10 of 4 0.21Down
Adult carcass8 20 of 4 0.40Down
Larval CNS15 24 of 4 0.68Down
Larval Salivary gland4 10 of 4 0.20Down
Larval midgut11 20 of 4 0.47Down
Larval tubule10 10 of 4 0.50Down
Larval hindgut7 10 of 4 0.33Down
Larval fat body16 22 of 4 0.70None
Larval trachea4 51 of 4 0.17Down
Larval carcass7 10 of 4 0.31Down
S2 cells (growing)21 24 of 4 0.91None
Whole fly23 24 of 4

Looking for FBgn0028916. 2 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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