Flyatlas logo

FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
Home & Search
Batch/table Search
Tissues Search
BLASTP Search
About & FAQ
Top 50
Original data
Interesting meta-analysis
Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0028931 through 18771 annotations produced 1 hits



(CG16863):

Annotation Number : CG16863
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0028931
Gbrowse : chr2L:13790962-13793268 (+) // 100.0 //
Probeset : 1637119_at
Accessions : protein= NP_001036361; /// NP_609674;, nucleotide= NM_001042896; /// NM_135830;
Pathway : 0005622 // intracellular // inferred from electronic annotation
Interpro : 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from elect
FlyMine data for FBgn0028931.
VDRC has 2 RNAi stocks for FBgn0028931 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain41 04 of 4 3.10Up
Head14 13 of 4 1.10None
Eye8 21 of 4 0.67None
Thoracicoabdominal ganglion35 14 of 4 2.70Up
Salivary gland16 21 of 4 1.26None
Crop14 24 of 4 1.10None
Midgut8 03 of 4 0.60Down
Tubule9 12 of 4 0.70Down
Hindgut8 14 of 4 0.60Down
Heart4 11 of 4 0.31Down
Fat body8 12 of 4 0.63Down
Ovary25 14 of 4 1.90Up
Testis11 04 of 4 0.80None
Male accessory glands6 10 of 4 0.40Down
Virgin spermatheca6 11 of 4 0.48Down
Mated spermatheca7 21 of 4 0.53None
Adult carcass13 23 of 4 1.00None
Larval CNS23 24 of 4 1.76Up
Larval Salivary gland13 14 of 4 1.04None
Larval midgut4 11 of 4 0.31Down
Larval tubule15 04 of 4 1.10None
Larval hindgut12 04 of 4 0.92None
Larval fat body16 22 of 4 1.20None
Larval trachea10 34 of 4 0.80None
Larval carcass12 03 of 4 0.94None
S2 cells (growing)22 14 of 4 1.66Up
Whole fly13 04 of 4

Looking for FBgn0028931. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime