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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0028935 through 18771 annotations produced 1 hits



(CG7653):

Annotation Number : CG7653
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0028935
Gbrowse : chr2L:15877614-15880065 (-) // 100.0 //
Probeset : 1624910_at
Accessions : protein= NP_609770;, nucleotide= NM_135926;
Pathway : 0005886 // plasma membrane // inferred from sequence or structural similarity
Interpro : 0004177 // aminopeptidase activity // inferred from sequence or structural similarity /// 0004177 // aminopeptidase acti
FlyMine data for FBgn0028935.
VDRC has 1 RNAi stocks for FBgn0028935 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 00 of 4 0.20Down
Head2 00 of 4 0.20Down
Eye5 10 of 4 0.34Down
Thoracicoabdominal ganglion4 10 of 4 0.30Down
Salivary gland6 10 of 4 0.41Down
Crop2 10 of 4 0.20Down
Midgut3 10 of 4 0.20Down
Tubule4 00 of 4 0.30Down
Hindgut5 10 of 4 0.40Down
Heart4 10 of 4 0.31Down
Fat body15 20 of 4 1.02None
Ovary2 10 of 4 0.20Down
Testis175 104 of 411.80Up
Male accessory glands7 40 of 4 0.50None
Virgin spermatheca8 10 of 4 0.59None
Mated spermatheca6 10 of 4 0.43Down
Adult carcass10 30 of 4 0.70None
Larval CNS5 30 of 4 0.34Down
Larval Salivary gland5 20 of 4 0.38Down
Larval midgut2 00 of 4 0.18Down
Larval tubule6 10 of 4 0.40Down
Larval hindgut6 10 of 4 0.42Down
Larval fat body17 80 of 4 1.20None
Larval trachea5 40 of 4 0.39Down
Larval carcass5 20 of 4 0.38Down
S2 cells (growing)2 10 of 4 0.17Down
Whole fly14 20 of 4

Looking for FBgn0028935. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime