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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0028938 through 18771 annotations produced 1 hits



(CG16886):

Annotation Number : CG16886
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0028938
Gbrowse : chr2L:13920691-13923550 (-) // 100.0 //
Probeset : 1626989_at
Accessions : protein= NP_609688;, nucleotide= NM_135844;
FlyMine data for FBgn0028938.
BioGrid reports that CG16886 interacts with CG9975 CG4835 .
VDRC has 3 RNAi stocks for FBgn0028938 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain5 ± 01 of 4 0.60None
Head13 ± 20 of 4 1.50None
Eye20 ± 24 of 4 2.35Up
Thoracicoabdominal ganglion7 ± 10 of 4 0.80None
Salivary gland14 ± 31 of 4 1.65None
Crop9 ± 00 of 4 1.00None
Midgut6 ± 10 of 4 0.70None
Tubule3 ± 00 of 4 0.40Down
Hindgut8 ± 10 of 4 0.90None
Heart6 ± 00 of 4 0.73None
Fat body9 ± 50 of 4 1.09None
Ovary3 ± 10 of 4 0.40Down
Testis2 ± 00 of 4 0.30Down
Male accessory glands6 ± 20 of 4 0.70None
Virgin spermatheca10 ± 20 of 4 1.17None
Mated spermatheca10 ± 11 of 4 1.14None
Adult carcass11 ± 10 of 4 1.30None
Larval CNS6 ± 12 of 4 0.70None
Larval Salivary gland5 ± 20 of 4 0.67None
Larval midgut4 ± 10 of 4 0.49None
Larval tubule8 ± 20 of 4 0.90None
Larval hindgut6 ± 20 of 4 0.68None
Larval fat body7 ± 30 of 4 0.90None
Larval trachea6 ± 10 of 4 0.73None
Larval carcass13 ± 42 of 4 1.55None
S2 cells (growing)5 ± 20 of 4 0.65None
Whole fly8 ± 11 of 4

Looking for FBgn0028938. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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