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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0028942 through 18771 annotations produced 1 hits



(CG16852):

Annotation Number : CG16852
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0028942
Gbrowse : chr2L:13540750-13541647 (+) // 100.0 //
Probeset : 1628504_at
Accessions : protein= NP_609661;, nucleotide= NM_135817;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0028942.
BioGrid reports that CG16852 interacts with CG9949 .
VDRC has 3 RNAi stocks for FBgn0028942 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain12 ± 11 of 4 0.40Down
Head9 ± 11 of 4 0.30Down
Eye9 ± 13 of 4 0.32Down
Thoracicoabdominal ganglion4 ± 10 of 4 0.20Down
Salivary gland9 ± 40 of 4 0.31Down
Crop5 ± 10 of 4 0.20Down
Midgut12 ± 20 of 4 0.40Down
Tubule5 ± 10 of 4 0.20Down
Hindgut8 ± 10 of 4 0.30Down
Heart6 ± 11 of 4 0.23Down
Fat body9 ± 20 of 4 0.34Down
Ovary5 ± 11 of 4 0.20Down
Testis331 ± 144 of 411.50Up
Male accessory glands9 ± 10 of 4 0.30Down
Virgin spermatheca5 ± 10 of 4 0.18Down
Mated spermatheca6 ± 20 of 4 0.23Down
Adult carcass12 ± 30 of 4 0.40Down
Larval CNS5 ± 30 of 4 0.19Down
Larval Salivary gland13 ± 40 of 4 0.48Down
Larval midgut16 ± 22 of 4 0.56Down
Larval tubule6 ± 10 of 4 0.20Down
Larval hindgut8 ± 10 of 4 0.30Down
Larval fat body57 ± 224 of 4 2.00None
Larval trachea11 ± 13 of 4 0.39Down
Larval carcass12 ± 20 of 4 0.42Down
S2 cells (growing)7 ± 01 of 4 0.26Down
Whole fly28 ± 24 of 4

Looking for FBgn0028942. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime