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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0028943 through 18771 annotations produced 1 hits



(CG15638):

Annotation Number : CG15638
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0028943
Gbrowse : chr2L:13535294-13535782 (-) // 100.0 //
Probeset : 1633490_at
Accessions : protein= NP_609660;, nucleotide= NM_135816;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0028943.
BioGrid reports that CG15638 interacts with CG3279 CG8609 Dmel CG40368 .
VDRC has 1 RNAi stocks for FBgn0028943 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain8 10 of 4 0.20Down
Head4 20 of 4 0.10Down
Eye1 00 of 4 0.04Down
Thoracicoabdominal ganglion9 30 of 4 0.20Down
Salivary gland5 10 of 4 0.15Down
Crop2 00 of 4 0.10Down
Midgut1 00 of 4 0.00Down
Tubule1 00 of 4 0.00Down
Hindgut1 00 of 4 0.00Down
Heart0 00 of 4 0.02Down
Fat body4 20 of 4 0.10Down
Ovary1 00 of 4 0.00Down
Testis495 274 of 412.40Up
Male accessory glands1 00 of 4 0.00Down
Virgin spermatheca6 30 of 4 0.16Down
Mated spermatheca1 00 of 4 0.03Down
Adult carcass3 00 of 4 0.10Down
Larval CNS2 10 of 4 0.06Down
Larval Salivary gland1 00 of 4 0.04Down
Larval midgut1 00 of 4 0.04Down
Larval tubule2 10 of 4 0.10Down
Larval hindgut3 10 of 4 0.08Down
Larval fat body30 161 of 4 0.80None
Larval trachea3 60 of 4 0.10Down
Larval carcass3 10 of 4 0.08Down
S2 cells (growing)1 00 of 4 0.04Down
Whole fly39 24 of 4

Looking for FBgn0028943. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime