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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0028949 through 18771 annotations produced 1 hits



/// (CG15254 /// DsecCG15254):

Annotation Number : CG15254
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0028949
Gbrowse : chr2L:15613927-15614824 (-) // 100.0 //
Probeset : 1634205_at
Accessions : protein= NP_609757;, nucleotide= NM_135913;
Interpro : 0004222 // metalloendopeptidase activity // inferred from sequence or structural similarity /// 0004222 // metalloendope
FlyMine data for FBgn0028949.
VDRC has 3 RNAi stocks for FBgn0028949 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 ± 00 of 4 0.00Down
Head2 ± 10 of 4 0.00Down
Eye2 ± 10 of 4 0.05Down
Thoracicoabdominal ganglion2 ± 00 of 4 0.00Down
Salivary gland8 ± 20 of 4 0.14Down
Crop3 ± 10 of 4 0.10Down
Midgut598 ± 754 of 410.10Up
Tubule8 ± 21 of 4 0.10Down
Hindgut112 ± 124 of 4 1.90Up
Heart0 ± 00 of 4 0.01Down
Fat body2 ± 10 of 4 0.04Down
Ovary2 ± 00 of 4 0.00Down
Testis1 ± 00 of 4 0.00Down
Male accessory glands1 ± 10 of 4 0.00Down
Virgin spermatheca3 ± 10 of 4 0.05Down
Mated spermatheca2 ± 10 of 4 0.04Down
Adult carcass5 ± 20 of 4 0.10Down
Larval CNS2 ± 00 of 4 0.04Down
Larval Salivary gland2 ± 10 of 4 0.04Down
Larval midgut141 ± 164 of 4 2.39Up
Larval tubule0 ± 00 of 4 0.00Down
Larval hindgut4 ± 10 of 4 0.08Down
Larval fat body4 ± 10 of 4 0.10Down
Larval trachea2 ± 10 of 4 0.03Down
Larval carcass1 ± 00 of 4 0.02Down
S2 cells (growing)1 ± 00 of 4 0.03Down
Whole fly59 ± 124 of 4

Looking for FBgn0028949. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime