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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0028953 through 18771 annotations produced 1 hits



(CG14478):

Annotation Number : CG14478
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0028953
Gbrowse : chr2R:13345185-13353085 (+) // 100.0 //
Probeset : 1638359_s_at
Accessions : protein= NP_611214; /// NP_725678;, nucleotide= NM_137370; /// NM_166229;
Interpro : 0003677 // DNA binding // inferred from electronic annotation
FlyMine data for FBgn0028953.
BDGP gene expression has embryonic in situ data for BEST:LD13441: 4 pix of staining in 1 body parts.
BioGrid reports that CG14478 interacts with CG5144 CG17567 CG2540 CG33130 CG4759 CG7558 CG7570 CG8900 CG9610 CG33103 .
VDRC has 1 RNAi stocks for FBgn0028953 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain585 ± 504 of 4 5.10Up
Head236 ± 84 of 4 2.10Up
Eye314 ± 204 of 4 2.73Up
Thoracicoabdominal ganglion428 ± 134 of 4 3.70Up
Salivary gland243 ± 184 of 4 2.11Up
Crop339 ± 104 of 4 2.90Up
Midgut142 ± 64 of 4 1.20Up
Tubule105 ± 24 of 4 0.90Down
Hindgut215 ± 54 of 4 1.90Up
Heart192 ± 94 of 4 1.67Up
Fat body181 ± 234 of 4 1.58Up
Ovary76 ± 14 of 4 0.70Down
Testis39 ± 24 of 4 0.30Down
Male accessory glands123 ± 44 of 4 1.10None
Virgin spermatheca145 ± 74 of 4 1.26Up
Mated spermatheca126 ± 44 of 4 1.10None
Adult carcass171 ± 64 of 4 1.50Up
Larval CNS491 ± 684 of 4 4.27Up
Larval Salivary gland162 ± 54 of 4 1.41Up
Larval midgut140 ± 84 of 4 1.22None
Larval tubule186 ± 74 of 4 1.60Up
Larval hindgut208 ± 84 of 4 1.81Up
Larval fat body216 ± 174 of 4 1.90Up
Larval trachea239 ± 114 of 4 2.08Up
Larval carcass222 ± 204 of 4 1.94Up
S2 cells (growing)157 ± 64 of 4 1.37Up
Whole fly115 ± 14 of 4

Looking for FBgn0028953. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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