FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0028955 through 18771 annotations produced 1 hits

(CG8788):

Annotation Number : CG8788
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0028955
Gbrowse : chr2R:5025978-5029486 (+) // 100.0 //
Probeset : 1634036_at
Accessions : protein= NP_610461;, nucleotide= NM_136617;
FlyMine data for FBgn0028955.
VDRC has 3 RNAi stocks for FBgn0028955 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	144 ± 2	4 of 4	0.30	Down
Head	987 ± 44	4 of 4	2.30	Up
Eye	694 ± 51	4 of 4	1.61	Up
Thoracicoabdominal ganglion	147 ± 5	4 of 4	0.30	Down
Salivary gland	73 ± 6	4 of 4	0.17	Down
Crop	208 ± 8	4 of 4	0.50	Down
Midgut	715 ± 30	4 of 4	1.70	Up
Tubule	327 ± 28	4 of 4	0.80	Down
Hindgut	527 ± 28	4 of 4	1.20	Up
Heart	1503 ± 152	4 of 4	3.49	Up
Fat body	1835 ± 212	4 of 4	4.26	Up
Ovary	351 ± 2	4 of 4	0.80	Down
Testis	75 ± 0	4 of 4	0.20	Down
Male accessory glands	146 ± 7	4 of 4	0.30	Down
Virgin spermatheca	1600 ± 57	4 of 4	3.72	Up
Mated spermatheca	1489 ± 88	4 of 4	3.46	Up
Adult carcass	1101 ± 47	4 of 4	2.60	Up
Larval CNS	101 ± 6	4 of 4	0.24	Down
Larval Salivary gland	43 ± 8	4 of 4	0.10	Down
Larval midgut	466 ± 15	4 of 4	1.08	None
Larval tubule	292 ± 10	4 of 4	0.70	Down
Larval hindgut	415 ± 29	4 of 4	0.96	None
Larval fat body	1239 ± 45	4 of 4	2.90	Up
Larval trachea	191 ± 39	4 of 4	0.45	Down
Larval carcass	321 ± 28	4 of 4	0.75	Down
S2 cells (growing)	73 ± 4	4 of 4	0.17	Down
Whole fly	430 ± 13	4 of 4

Looking for FBgn0028955. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720