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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0028978 through 18771 annotations produced 1 hits

tribbles (trbl):

Annotation Number : CG5408
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0028978
Gbrowse : chr3L:20389699-20394687 (-) // 100.0 //
Probeset : 1629044_at
Accessions : protein= NP_524672;, nucleotide= NM_079933;
Interpro : 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase
FlyMine data for FBgn0028978.
BDGP gene expression has embryonic in situ data for trbl: 29 pix of staining in 26 body parts.
Homophila reports that CG5408 is a close match (6e-15) to human gene AKT2 (NP_001617), a gene associated with Diabetes mellitus, type II, 125853 (3).
BioGrid reports that CG5408 interacts with CG6333 CG7347 CG7670 CG8679 CG9075 CG5460 CG5460 CG1395 CG3936 CG4354 CG4488 CG4488 CG32417 .
TRiP has 3 RNAi stocks for FBgn0028978 available for purchase.
VDRC has 3 RNAi stocks for FBgn0028978 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain15 00 of 4 0.20Down
Head40 24 of 4 0.60Down
Eye34 24 of 4 0.48Down
Thoracicoabdominal ganglion17 11 of 4 0.20Down
Salivary gland62 92 of 4 0.86None
Crop88 44 of 4 1.20None
Midgut119 24 of 4 1.70Up
Tubule174 254 of 4 2.40Up
Hindgut151 34 of 4 2.10Up
Heart53 34 of 4 0.74Down
Fat body119 214 of 4 1.66Up
Ovary101 34 of 4 1.40Up
Testis37 24 of 4 0.50Down
Male accessory glands37 20 of 4 0.50Down
Virgin spermatheca352 344 of 4 4.89Up
Mated spermatheca118 94 of 4 1.65Up
Adult carcass98 104 of 4 1.40None
Larval CNS64 64 of 4 0.89None
Larval Salivary gland92 44 of 4 1.28Up
Larval midgut88 63 of 4 1.23None
Larval tubule58 14 of 4 0.80None
Larval hindgut130 64 of 4 1.81Up
Larval fat body41 33 of 4 0.60Down
Larval trachea59 94 of 4 0.83None
Larval carcass73 54 of 4 1.01None
S2 cells (growing)134 14 of 4 1.87Up
Whole fly72 54 of 4

Looking for FBgn0028978. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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