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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0028979 through 18771 annotations produced 1 hits



tiptop (tio):

Annotation Number : CG12630
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0028979
Gbrowse : chr2L:22020037-22024313 (+) // 100.0 //
Probeset : 1632325_at
Accessions : protein= NP_524733;, nucleotide= NM_079994;
Pathway : DNA-dependent // non-traceable author statement /// 0007275 // multicellular organismal development // inferred from el
Interpro : head // inferred from mutant phenotype /// 0045449 // regulation of transcription // inferred from sequence or structur
FlyMine data for FBgn0028979.
TRiP has 1 RNAi stocks for FBgn0028979 available for purchase.
VDRC has 3 RNAi stocks for FBgn0028979 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain16 ± 22 of 4 1.50None
Head5 ± 10 of 4 0.50None
Eye3 ± 10 of 4 0.33Down
Thoracicoabdominal ganglion36 ± 24 of 4 3.50Up
Salivary gland3 ± 20 of 4 0.33None
Crop17 ± 31 of 4 1.60None
Midgut1 ± 10 of 4 0.20Down
Tubule2 ± 00 of 4 0.20Down
Hindgut1 ± 10 of 4 0.20Down
Heart2 ± 10 of 4 0.27Down
Fat body7 ± 20 of 4 0.70None
Ovary0 ± 00 of 4 0.00Down
Testis123 ± 54 of 411.70Up
Male accessory glands6 ± 10 of 4 0.60None
Virgin spermatheca3 ± 10 of 4 0.29Down
Mated spermatheca5 ± 20 of 4 0.53None
Adult carcass12 ± 20 of 4 1.10None
Larval CNS20 ± 14 of 4 1.94Up
Larval Salivary gland3 ± 10 of 4 0.31Down
Larval midgut2 ± 10 of 4 0.23Down
Larval tubule2 ± 10 of 4 0.20Down
Larval hindgut2 ± 10 of 4 0.20Down
Larval fat body19 ± 101 of 4 1.90None
Larval trachea1 ± 10 of 4 0.17Down
Larval carcass4 ± 10 of 4 0.43None
S2 cells (growing)1 ± 00 of 4 0.14Down
Whole fly10 ± 22 of 4

Looking for FBgn0028979. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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