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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0028983 through 18771 annotations produced 1 hits



serpin 6 (Spn6):

Annotation Number : CG10913
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0028983
Gbrowse : chr2R:14013809-14015724 (+) // 100.0 //
Probeset : 1632613_at
Accessions : protein= NP_524953;, nucleotide= NM_080214;
Interpro : 0004867 // serine-type endopeptidase inhibitor activity // inferred from sequence or structural similarity /// 0004867 /
FlyMine data for FBgn0028983.
BDGP gene expression has embryonic in situ data for Spn6: 20 pix of staining in 6 body parts.
Homophila reports that CG10913 is a close match (1e-17) to human gene C1NH;HAE1;HAE2;SERPING1 (NP_001027466), a gene associated with Angioedema, hereditary, 106100 (3).
BioGrid reports that CG10913 interacts with CG2986 CG8291 .
TRiP has 1 RNAi stocks for FBgn0028983 available for purchase.
VDRC has 2 RNAi stocks for FBgn0028983 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain46 ± 74 of 4 0.30Down
Head61 ± 54 of 4 0.40Down
Eye146 ± 534 of 4 1.04None
Thoracicoabdominal ganglion131 ± 124 of 4 0.90None
Salivary gland77 ± 51 of 4 0.55Down
Crop246 ± 154 of 4 1.70Up
Midgut1357 ± 514 of 4 9.60Up
Tubule235 ± 164 of 4 1.70Up
Hindgut153 ± 114 of 4 1.10None
Heart708 ± 334 of 4 5.03Up
Fat body51 ± 224 of 4 0.36Down
Ovary36 ± 54 of 4 0.30Down
Testis25 ± 34 of 4 0.20Down
Male accessory glands60 ± 24 of 4 0.40Down
Virgin spermatheca38 ± 43 of 4 0.27Down
Mated spermatheca62 ± 24 of 4 0.44Down
Adult carcass74 ± 34 of 4 0.50Down
Larval CNS114 ± 114 of 4 0.81None
Larval Salivary gland863 ± 574 of 4 6.13Up
Larval midgut2681 ± 1294 of 419.02Up
Larval tubule207 ± 134 of 4 1.50Up
Larval hindgut448 ± 244 of 4 3.18Up
Larval fat body163 ± 144 of 4 1.20None
Larval trachea236 ± 534 of 4 1.68Up
Larval carcass313 ± 214 of 4 2.22Up
S2 cells (growing)191 ± 124 of 4 1.36Up
Whole fly141 ± 124 of 4

Looking for FBgn0028983. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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