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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0028984 through 18771 annotations produced 1 hits



Dm-serpin-88Ea (Spn5):

Annotation Number : CG18525
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0028984
Gbrowse : chr3R:11028782-11032147 (-) // 100.0 //
Probeset : 1636943_s_at
Accessions : protein= NP_524954; /// NP_788678;, nucleotide= NM_080215; /// NM_176501;
Interpro : 0004867 // serine-type endopeptidase inhibitor activity // inferred from electronic annotation /// 0004867 // serine-typ
FlyMine data for FBgn0028984.
BDGP gene expression has embryonic in situ data for Spn5: 38 pix of staining in 18 body parts.
Homophila reports that CG18525 is a close match (1e-11) to human gene CBP2;PPROM;SERPINH2 (NP_001226), a gene associated with {Preterm premature rupture of the membranes, susceptibility to}, 610504 (3).
BioGrid reports that CG18525 interacts with CG9453 CG4753 CG5094 CG7885 .
TRiP has 1 RNAi stocks for FBgn0028984 available for purchase.
VDRC has 2 RNAi stocks for FBgn0028984 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain300 ± 144 of 4 0.90None
Head553 ± 124 of 4 1.70Up
Eye329 ± 144 of 4 1.02None
Thoracicoabdominal ganglion374 ± 114 of 4 1.20None
Salivary gland71 ± 30 of 4 0.22Down
Crop294 ± 114 of 4 0.90None
Midgut13 ± 20 of 4 0.00Down
Tubule12 ± 30 of 4 0.00Down
Hindgut307 ± 64 of 4 0.90None
Heart296 ± 244 of 4 0.92None
Fat body85 ± 133 of 4 0.26Down
Ovary301 ± 24 of 4 0.90None
Testis41 ± 33 of 4 0.10Down
Male accessory glands119 ± 124 of 4 0.40Down
Virgin spermatheca997 ± 334 of 4 3.08Up
Mated spermatheca1133 ± 844 of 4 3.50Up
Adult carcass226 ± 104 of 4 0.70Down
Larval CNS184 ± 84 of 4 0.57Down
Larval Salivary gland114 ± 74 of 4 0.35Down
Larval midgut38 ± 40 of 4 0.12Down
Larval tubule12 ± 30 of 4 0.00Down
Larval hindgut536 ± 74 of 4 1.66Up
Larval fat body20 ± 20 of 4 0.10Down
Larval trachea3063 ± 3214 of 4 9.47Up
Larval carcass452 ± 564 of 4 1.40None
S2 cells (growing)1022 ± 254 of 4 3.16Up
Whole fly323 ± 194 of 4

Looking for FBgn0028984. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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