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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0028986 through 18771 annotations produced 1 hits



serpin 3 (Spn3):

Annotation Number : CG9334
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0028986
Gbrowse : chr2L:20836607-20838179 (-) // 100.0 //
Probeset : 1636784_at
Accessions : protein= NP_524956;, nucleotide= NM_080217;
Interpro : 0004867 // serine-type endopeptidase inhibitor activity // inferred from sequence or structural similarity /// 0004867 /
FlyMine data for FBgn0028986.
Homophila reports that CG9334 is a close match (1e-15) to human gene C1NH;HAE1;HAE2;SERPING1 (NP_001027466), a gene associated with Angioedema, hereditary, 106100 (3).
TRiP has 1 RNAi stocks for FBgn0028986 available for purchase.
VDRC has 4 RNAi stocks for FBgn0028986 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 ± 00 of 4 0.00Down
Head1 ± 00 of 4 0.00Down
Eye0 ± 00 of 4 0.00Down
Thoracicoabdominal ganglion2 ± 00 of 4 0.00Down
Salivary gland5 ± 10 of 4 0.01Down
Crop1 ± 00 of 4 0.00Down
Midgut1 ± 00 of 4 0.00Down
Tubule1 ± 00 of 4 0.00Down
Hindgut4 ± 10 of 4 0.00Down
Heart0 ± 00 of 4 0.00Down
Fat body2 ± 10 of 4 0.00Down
Ovary4 ± 31 of 4 0.00Down
Testis56 ± 283 of 4 0.10Down
Male accessory glands10476 ± 2964 of 415.10Up
Virgin spermatheca2 ± 10 of 4 0.00Down
Mated spermatheca0 ± 00 of 4 0.00Down
Adult carcass66 ± 173 of 4 0.10Down
Larval CNS0 ± 00 of 4 0.00Down
Larval Salivary gland2 ± 00 of 4 0.00Down
Larval midgut3 ± 00 of 4 0.00Down
Larval tubule3 ± 10 of 4 0.00Down
Larval hindgut2 ± 11 of 4 0.00Down
Larval fat body2 ± 10 of 4 0.00Down
Larval trachea2 ± 30 of 4 0.00Down
Larval carcass0 ± 00 of 4 0.00Down
S2 cells (growing)0 ± 00 of 4 0.00Down
Whole fly694 ± 1174 of 4

Looking for FBgn0028986. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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