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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0028990 through 18771 annotations produced 1 hits



Dm-serpin-27A (Spn27A):

Annotation Number : CG11331
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0028990
Gbrowse : chr2L:6671777-6673344 (-) // 100.0 //
Probeset : 1628229_at
Accessions : protein= NP_652024;, nucleotide= NM_143767;
Pathway : 0005576 // extracellular region // inferred from direct assay
Interpro : 0004857 // enzyme inhibitor activity // inferred from direct assay /// 0004867 // serine-type endopeptidase inhibitor ac
FlyMine data for FBgn0028990.
BDGP gene expression has embryonic in situ data for serpin-27A: 32 pix of staining in 11 body parts.
Homophila reports that CG11331 is a close match (6e-14) to human gene CBP2;PPROM;SERPINH2 (NP_001226), a gene associated with {Preterm premature rupture of the membranes, susceptibility to}, 610504 (3).
BioGrid reports that CG11331 interacts with CG5779 .
VDRC has 1 RNAi stocks for FBgn0028990 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain80 ± 44 of 4 0.70Down
Head300 ± 114 of 4 2.50Up
Eye307 ± 114 of 4 2.53Up
Thoracicoabdominal ganglion72 ± 44 of 4 0.60Down
Salivary gland735 ± 294 of 4 6.05Up
Crop1521 ± 264 of 412.50Up
Midgut50 ± 40 of 4 0.40Down
Tubule9 ± 00 of 4 0.10Down
Hindgut401 ± 64 of 4 3.30Up
Heart281 ± 164 of 4 2.32Up
Fat body330 ± 514 of 4 2.72Up
Ovary121 ± 54 of 4 1.00None
Testis18 ± 11 of 4 0.20Down
Male accessory glands22 ± 40 of 4 0.20Down
Virgin spermatheca421 ± 424 of 4 3.47Up
Mated spermatheca380 ± 144 of 4 3.13Up
Adult carcass401 ± 234 of 4 3.30Up
Larval CNS86 ± 124 of 4 0.71Down
Larval Salivary gland184 ± 40 of 4 1.52Up
Larval midgut53 ± 61 of 4 0.44Down
Larval tubule28 ± 30 of 4 0.20Down
Larval hindgut306 ± 174 of 4 2.52Up
Larval fat body467 ± 554 of 4 3.90Up
Larval trachea559 ± 874 of 4 4.61Up
Larval carcass327 ± 134 of 4 2.69Up
S2 cells (growing)406 ± 44 of 4 3.34Up
Whole fly121 ± 64 of 4

Looking for FBgn0028990. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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