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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0028996 through 18771 annotations produced 1 hits



chr4:619179-628119 (-) // 100.0 // (D-onecut):

Annotation Number : CG1922
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : full length
Gbrowse : March 2006 (FlyBase/BDGP 5.3)
Probeset : 1630376_at
Accessions : protein= , nucleotide= NP_524842;
Pathway : "0006350 // transcription // inferred from sequence or structural similarity /// 0006350 // transcription // inferred fr
Interpro : DNA-dependent // inferred from electronic annotation /// 0006355 // regulation of transcription
FlyMine data for full length.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain482 ± 404 of 426.90Up
Head132 ± 154 of 4 7.40Up
Eye38 ± 24 of 4 2.12Up
Thoracicoabdominal ganglion354 ± 304 of 419.80Up
Salivary gland12 ± 11 of 4 0.69None
Crop6 ± 03 of 4 0.30Down
Midgut2 ± 00 of 4 0.10Down
Tubule2 ± 00 of 4 0.10Down
Hindgut3 ± 10 of 4 0.20Down
Heart1 ± 00 of 4 0.07Down
Fat body9 ± 43 of 4 0.52None
Ovary1 ± 00 of 4 0.10Down
Testis0 ± 00 of 4 0.00Down
Male accessory glands8 ± 11 of 4 0.50None
Virgin spermatheca3 ± 00 of 4 0.17Down
Mated spermatheca4 ± 10 of 4 0.24Down
Adult carcass10 ± 23 of 4 0.60None
Larval CNS479 ± 1124 of 426.81Up
Larval Salivary gland4 ± 01 of 4 0.24Down
Larval midgut3 ± 00 of 4 0.19Down
Larval tubule2 ± 11 of 4 0.10Down
Larval hindgut2 ± 02 of 4 0.14Down
Larval fat body1 ± 00 of 4 0.10Down
Larval trachea2 ± 11 of 4 0.16Down
Larval carcass2 ± 01 of 4 0.16Down
S2 cells (growing)1 ± 00 of 4 0.09Down
Whole fly17 ± 34 of 4

Looking for FBgn0028996. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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