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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0028997 through 18771 annotations produced 1 hits



nmdyn-D7 (nmdyn-D7):

Annotation Number : CG8362
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0028997
Gbrowse : chr3R:5505662-5507224 (+) // 100.0 //
Probeset : 1640512_at
Accessions : protein= NP_649926;, nucleotide= NM_141669;
Interpro : 0004550 // nucleoside diphosphate kinase activity // inferred from sequence or structural similarity /// 0004550 // nucl
FlyMine data for FBgn0028997.
BioGrid reports that CG8362 interacts with CG9813 CG9665 .
TRiP has 1 RNAi stocks for FBgn0028997 available for purchase.
VDRC has 3 RNAi stocks for FBgn0028997 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 ± 10 of 4 0.00Down
Head5 ± 10 of 4 0.00Down
Eye4 ± 10 of 4 0.03Down
Thoracicoabdominal ganglion4 ± 20 of 4 0.00Down
Salivary gland10 ± 30 of 4 0.06Down
Crop4 ± 10 of 4 0.00Down
Midgut10 ± 30 of 4 0.10Down
Tubule7 ± 10 of 4 0.00Down
Hindgut11 ± 20 of 4 0.10Down
Heart4 ± 00 of 4 0.02Down
Fat body4 ± 20 of 4 0.03Down
Ovary178 ± 74 of 4 1.10None
Testis975 ± 244 of 4 5.80Up
Male accessory glands1 ± 00 of 4 0.00Down
Virgin spermatheca2 ± 00 of 4 0.01Down
Mated spermatheca7 ± 20 of 4 0.04Down
Adult carcass11 ± 20 of 4 0.10Down
Larval CNS50 ± 34 of 4 0.30Down
Larval Salivary gland15 ± 30 of 4 0.09Down
Larval midgut6 ± 20 of 4 0.04Down
Larval tubule10 ± 21 of 4 0.10Down
Larval hindgut18 ± 00 of 4 0.11Down
Larval fat body94 ± 434 of 4 0.60None
Larval trachea48 ± 24 of 4 0.29Down
Larval carcass14 ± 00 of 4 0.09Down
S2 cells (growing)122 ± 34 of 4 0.72Down
Whole fly168 ± 104 of 4

Looking for FBgn0028997. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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