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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0029067 through 18771 annotations produced 1 hits



lethal (1) G0269 (l(1)G0269):

Annotation Number : CG1696
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0029067
Gbrowse : chrX:21190811-21195060 (-) // 99.81 //
Probeset : 1630094_at
Accessions : protein= NP_608449;, nucleotide= NM_134605;
Pathway : 0005635 // nuclear envelope // inferred from sequence or structural similarity /// 0005789 // endoplasmic reticulum memb
Interpro : 0004721 // phosphoprotein phosphatase activity // inferred from electronic annotation /// 0004722 // protein serine/thre
FlyMine data for FBgn0029067.
BioGrid reports that CG1696 interacts with CG31029 CG4216 CG4820 CG4887 .
TRiP has 1 RNAi stocks for FBgn0029067 available for purchase.
VDRC has 3 RNAi stocks for FBgn0029067 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain234 ± 54 of 4 5.20Up
Head90 ± 64 of 4 2.00Up
Eye94 ± 64 of 4 2.10Up
Thoracicoabdominal ganglion232 ± 54 of 4 5.10Up
Salivary gland72 ± 74 of 4 1.61Up
Crop107 ± 64 of 4 2.40Up
Midgut85 ± 34 of 4 1.90Up
Tubule92 ± 14 of 4 2.00Up
Hindgut70 ± 14 of 4 1.60Up
Heart72 ± 74 of 4 1.61Up
Fat body114 ± 124 of 4 2.53Up
Ovary46 ± 34 of 4 1.00None
Testis8 ± 14 of 4 0.20Down
Male accessory glands60 ± 54 of 4 1.30None
Virgin spermatheca85 ± 54 of 4 1.88Up
Mated spermatheca79 ± 84 of 4 1.75Up
Adult carcass73 ± 74 of 4 1.60Up
Larval CNS157 ± 94 of 4 3.48Up
Larval Salivary gland64 ± 64 of 4 1.43Up
Larval midgut85 ± 54 of 4 1.89Up
Larval tubule71 ± 74 of 4 1.60Up
Larval hindgut70 ± 34 of 4 1.56Up
Larval fat body57 ± 64 of 4 1.30None
Larval trachea53 ± 64 of 4 1.19None
Larval carcass75 ± 44 of 4 1.68Up
S2 cells (growing)159 ± 14 of 4 3.53Up
Whole fly45 ± 34 of 4

Looking for FBgn0029067. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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