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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0029079 through 18771 annotations produced 1 hits



icln (icln):

Annotation Number : CG4924
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0029079
Gbrowse : chr2R:13478470-13479386 (+) // 99.52 //
Probeset : 1626871_at
Accessions : protein= NP_611237;, nucleotide= NM_137393;
Interpro : 0005225 // volume-sensitive anion channel activity // inferred from sequence or structural similarity
FlyMine data for FBgn0029079.
VDRC has 4 RNAi stocks for FBgn0029079 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain77 14 of 4 0.60Down
Head32 24 of 4 0.20Down
Eye38 24 of 4 0.28Down
Thoracicoabdominal ganglion67 44 of 4 0.50Down
Salivary gland22 11 of 4 0.16Down
Crop27 04 of 4 0.20Down
Midgut25 24 of 4 0.20Down
Tubule35 44 of 4 0.30Down
Hindgut24 24 of 4 0.20Down
Heart25 14 of 4 0.18Down
Fat body25 24 of 4 0.19Down
Ovary395 14 of 4 2.80Up
Testis62 24 of 4 0.50Down
Male accessory glands44 24 of 4 0.30Down
Virgin spermatheca50 54 of 4 0.36Down
Mated spermatheca55 54 of 4 0.39Down
Adult carcass21 14 of 4 0.20Down
Larval CNS500 384 of 4 3.59Up
Larval Salivary gland114 84 of 4 0.82None
Larval midgut21 34 of 4 0.15Down
Larval tubule38 24 of 4 0.30Down
Larval hindgut50 24 of 4 0.36Down
Larval fat body40 34 of 4 0.30Down
Larval trachea136 144 of 4 0.98None
Larval carcass57 54 of 4 0.41Down
S2 cells (growing)151 34 of 4 1.09None
Whole fly139 34 of 4

Looking for FBgn0029079. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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