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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0029082 through 18771 annotations produced 1 hits



hibris (hbs):

Annotation Number : CG7449
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0029082
Gbrowse : chr2R:10898902-10928883 (+) // 99.62 //
Probeset : 1637539_a_at
Accessions : protein= NP_524702; /// NP_788355;, nucleotide= NM_079963; /// NM_176175;
Pathway : 0005886 // plasma membrane // inferred from sequence or structural similarity
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0029082.
Homophila reports that CG7449 is a close match (1e-11) to human gene DCC (NP_005206), a gene associated with Colorectal cancer (3).
BioGrid reports that CG7449 interacts with CG33141 .
VDRC has 5 RNAi stocks for FBgn0029082 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain124 ± 34 of 417.30Up
Head28 ± 14 of 4 3.90Up
Eye28 ± 24 of 4 3.93Up
Thoracicoabdominal ganglion98 ± 34 of 413.60Up
Salivary gland13 ± 30 of 4 1.83None
Crop2 ± 10 of 4 0.40None
Midgut1 ± 00 of 4 0.10Down
Tubule4 ± 00 of 4 0.60Down
Hindgut4 ± 20 of 4 0.60None
Heart1 ± 00 of 4 0.14Down
Fat body10 ± 61 of 4 1.43None
Ovary0 ± 00 of 4 0.10Down
Testis1 ± 00 of 4 0.20Down
Male accessory glands5 ± 20 of 4 0.80None
Virgin spermatheca5 ± 00 of 4 0.78None
Mated spermatheca13 ± 42 of 4 1.88None
Adult carcass3 ± 10 of 4 0.50None
Larval CNS144 ± 194 of 420.11Up
Larval Salivary gland5 ± 21 of 4 0.76None
Larval midgut1 ± 00 of 4 0.22Down
Larval tubule3 ± 10 of 4 0.40None
Larval hindgut7 ± 13 of 4 1.02None
Larval fat body3 ± 10 of 4 0.50None
Larval trachea49 ± 84 of 4 6.90Up
Larval carcass20 ± 14 of 4 2.91Up
S2 cells (growing)1 ± 00 of 4 0.23Down
Whole fly7 ± 11 of 4

Looking for FBgn0029082. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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