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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0029094 through 18771 annotations produced 1 hits



anti-silencing factor 1 (asf1):

Annotation Number : CG9383
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0029094
Gbrowse : chr3L:19611991-19613501 (+) // 100.0 //
Probeset : 1635537_at
Accessions : protein= NP_524163;, nucleotide= NM_079439;
Pathway : via spliceosome // inferred from mutant phenotype /// 0048813 // dendrite morphogenesis // inferred from mutant phenoty
Interpro : 0005634 // nucleus // inferred from electronic annotation /// 0005678 // chromatin assembly complex // inferred from seq
FlyMine data for FBgn0029094.
BDGP gene expression has embryonic in situ data for asf1: 25 pix of staining in 20 body parts.
BioGrid reports that CG9383 interacts with CG5942 CG5942 CG18740 CG7467 .
TRiP has 1 RNAi stocks for FBgn0029094 available for purchase.
VDRC has 3 RNAi stocks for FBgn0029094 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain29 34 of 4 0.20Down
Head25 14 of 4 0.20Down
Eye50 34 of 4 0.39Down
Thoracicoabdominal ganglion29 24 of 4 0.20Down
Salivary gland62 54 of 4 0.48Down
Crop29 24 of 4 0.20Down
Midgut38 24 of 4 0.30Down
Tubule46 24 of 4 0.40Down
Hindgut25 14 of 4 0.20Down
Heart35 14 of 4 0.27Down
Fat body37 74 of 4 0.29Down
Ovary322 54 of 4 2.50Up
Testis8 13 of 4 0.10Down
Male accessory glands27 32 of 4 0.20Down
Virgin spermatheca36 24 of 4 0.28Down
Mated spermatheca42 34 of 4 0.33Down
Adult carcass29 53 of 4 0.20Down
Larval CNS164 224 of 4 1.26None
Larval Salivary gland144 34 of 4 1.11None
Larval midgut49 34 of 4 0.38Down
Larval tubule55 34 of 4 0.40Down
Larval hindgut63 34 of 4 0.49Down
Larval fat body28 53 of 4 0.20Down
Larval trachea120 214 of 4 0.93None
Larval carcass74 54 of 4 0.58Down
S2 cells (growing)130 24 of 4 1.00None
Whole fly129 84 of 4

Looking for FBgn0029094. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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