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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0029095 through 18771 annotations produced 2 hits



arouser (aru):

Annotation Number : CG4276
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0029095
Gbrowse : chr2L:861848-868352 (-) // 100.0 //
Probeset : 1629387_s_at
Accessions : protein= NP_523449; /// NP_722663; /// NP_722665;, nucleotide= NM_078725; /// NM_164393; /// NM_164395;
Pathway : engulfment // inferred from mutant phenotype /// 0007173 // epidermal growth factor receptor signaling pathway // infer
Interpro : 0005622 // intracellular // inferred from electronic annotation /// 0005840 // ribosome // inferred from electronic anno
FlyMine data for FBgn0029095.
BioGrid reports that CG4276 interacts with CG5522 CG5654 CG9394 CG5089 CG5140 CG5346 CG5502 CG6040 CG6459 CG6695 CG7073 CG7283 CG7800 CG8159 CG8383 CG9028 CG9045 CG9426 CG9914 .
VDRC has 3 RNAi stocks for FBgn0029095 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain28 24 of 4 0.30Down
Head170 74 of 4 2.00Up
Eye290 124 of 4 3.44Up
Thoracicoabdominal ganglion28 23 of 4 0.30Down
Salivary gland186 104 of 4 2.21Up
Crop1170 374 of 413.90Up
Midgut16 20 of 4 0.20Down
Tubule31 33 of 4 0.40Down
Hindgut337 94 of 4 4.00Up
Heart56 34 of 4 0.67Down
Fat body43 24 of 4 0.51Down
Ovary55 34 of 4 0.70Down
Testis58 54 of 4 0.70Down
Male accessory glands613 384 of 4 7.30Up
Virgin spermatheca149 104 of 4 1.77Up
Mated spermatheca194 194 of 4 2.30Up
Adult carcass163 134 of 4 1.90Up
Larval CNS36 44 of 4 0.43Down
Larval Salivary gland131 94 of 4 1.56Up
Larval midgut36 34 of 4 0.43Down
Larval tubule45 14 of 4 0.50Down
Larval hindgut248 34 of 4 2.95Up
Larval fat body11 30 of 4 0.10Down
Larval trachea845 1244 of 410.03Up
Larval carcass199 34 of 4 2.37Up
S2 cells (growing)493 214 of 4 5.85Up
Whole fly84 34 of 4



chr2L:10408350-10410467 (+) // 100.0 // (arouser /// male female sterile 31):

Annotation Number : CG5271
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : full length
Gbrowse : March 2006 (FlyBase/BDGP 5.3)
Probeset : 1624906_at
Accessions : protein= , nucleotide= NP_476778;
Pathway : "0006325 // chromatin organization // non-traceable author statement /// 0006355 // regulation of transcription
Interpro : DNA-dependent // non-traceable author statement /// 0006412 // translation // inferred from sequence or structural simi
FlyMine data for full length.
BioGrid reports that CG5271 interacts with CG6667 CG7386 CG7546 CG7987 CG8079 CG9099 CG9119 .


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3257 744 of 4 0.70Down
Head5205 1944 of 4 1.10None
Eye5692 1434 of 4 1.22Up
Thoracicoabdominal ganglion4710 904 of 4 1.00None
Salivary gland12632 4164 of 4 2.70Up
Crop6799 3974 of 4 1.50Up
Midgut6050 1814 of 4 1.30Up
Tubule4356 924 of 4 0.90Down
Hindgut5622 1264 of 4 1.20Up
Heart6443 3894 of 4 1.38Up
Fat body6531 8204 of 4 1.40Up
Ovary3951 844 of 4 0.80None
Testis1653 874 of 4 0.40Down
Male accessory glands10384 1994 of 4 2.20Up
Virgin spermatheca5897 3034 of 4 1.26Up
Mated spermatheca5993 1224 of 4 1.28Up
Adult carcass6314 2904 of 4 1.40Up
Larval CNS3008 2274 of 4 0.64Down
Larval Salivary gland9045 4774 of 4 1.94Up
Larval midgut5509 1584 of 4 1.18None
Larval tubule5652 834 of 4 1.20Up
Larval hindgut4937 1134 of 4 1.06None
Larval fat body8813 8544 of 4 1.90Up
Larval trachea6319 134 of 4 1.35Up
Larval carcass5265 3934 of 4 1.13None
S2 cells (growing)4792 914 of 4 1.03None
Whole fly4673 2944 of 4

Looking for FBgn0029095. 2 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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