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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0029114 through 18771 annotations produced 1 hits



Tollo (Tollo):

Annotation Number : CG6890
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0029114
Gbrowse : chr3L:15228740-15235932 (+) // 100.0 //
Probeset : 1637481_at
Accessions : protein= NP_524757;, nucleotide= NM_080018;
Pathway : 0005886 // plasma membrane // inferred from sequence or structural similarity /// 0016020 // membrane // inferred from e
Interpro : 0004872 // receptor activity // inferred from electronic annotation /// 0004888 // transmembrane receptor activity // in
FlyMine data for FBgn0029114.
Homophila reports that CG6890 is a close match (4e-13) to human gene LRRK2;PARK8 (NP_940980), a gene associated with Parkinson disease-8, 607060 (3).
TRiP has 1 RNAi stocks for FBgn0029114 available for purchase.
VDRC has 5 RNAi stocks for FBgn0029114 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain36 14 of 4 0.50Down
Head78 14 of 4 1.10None
Eye67 24 of 4 0.95None
Thoracicoabdominal ganglion77 14 of 4 1.10None
Salivary gland24 31 of 4 0.34Down
Crop41 44 of 4 0.60Down
Midgut22 14 of 4 0.30Down
Tubule12 13 of 4 0.20Down
Hindgut177 54 of 4 2.50Up
Heart22 14 of 4 0.32Down
Fat body52 44 of 4 0.74None
Ovary193 114 of 4 2.70Up
Testis86 34 of 4 1.20None
Male accessory glands82 94 of 4 1.10None
Virgin spermatheca33 34 of 4 0.47Down
Mated spermatheca36 64 of 4 0.51Down
Adult carcass47 14 of 4 0.70None
Larval CNS278 264 of 4 3.89Up
Larval Salivary gland18 24 of 4 0.26Down
Larval midgut31 24 of 4 0.44Down
Larval tubule19 14 of 4 0.30Down
Larval hindgut184 64 of 4 2.58Up
Larval fat body38 04 of 4 0.50Down
Larval trachea247 64 of 4 3.46Up
Larval carcass148 224 of 4 2.08Up
S2 cells (growing)94 64 of 4 1.33None
Whole fly71 84 of 4

Looking for FBgn0029114. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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