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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0029117 through 18771 annotations produced 1 hits



Surfeit 1 (Surf1):

Annotation Number : CG9943
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0029117
Gbrowse : chr3L:6951445-6952647 (+) // 100.0 //
Probeset : 1625163_at
Accessions : protein= NP_524758;, nucleotide= NM_080019;
Pathway : 0005739 // mitochondrion // inferred from electronic annotation /// 0005743 // mitochondrial inner membrane // inferred
Interpro : 0015232 // heme transporter activity // inferred from sequence or structural similarity
FlyMine data for FBgn0029117.
Homophila reports that CG9943 is a close match (8e-58) to human gene SURF1 (NP_003163), a gene associated with Leigh syndrome, due to COX deficiency, 256000 (3).
TRiP has 2 RNAi stocks for FBgn0029117 available for purchase.
VDRC has 5 RNAi stocks for FBgn0029117 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain135 44 of 4 1.00None
Head102 44 of 4 0.70Down
Eye87 24 of 4 0.63Down
Thoracicoabdominal ganglion166 54 of 4 1.20Up
Salivary gland80 104 of 4 0.58Down
Crop155 54 of 4 1.10Up
Midgut122 54 of 4 0.90None
Tubule92 24 of 4 0.70Down
Hindgut124 54 of 4 0.90None
Heart130 14 of 4 0.94Down
Fat body93 144 of 4 0.67Down
Ovary226 44 of 4 1.60Up
Testis94 54 of 4 0.70Down
Male accessory glands82 34 of 4 0.60Down
Virgin spermatheca99 74 of 4 0.72Down
Mated spermatheca93 64 of 4 0.67Down
Adult carcass144 44 of 4 1.00None
Larval CNS96 24 of 4 0.70Down
Larval Salivary gland131 64 of 4 0.95None
Larval midgut130 34 of 4 0.94None
Larval tubule151 54 of 4 1.10None
Larval hindgut151 104 of 4 1.09None
Larval fat body97 44 of 4 0.70Down
Larval trachea118 84 of 4 0.86Down
Larval carcass116 84 of 4 0.84None
S2 cells (growing)66 14 of 4 0.48Down
Whole fly138 24 of 4

Looking for FBgn0029117. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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