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FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0029118 through 18771 annotations produced 3 hits



Sucb (Sucb):

Annotation Number : CG10622
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0029118
Gbrowse : chr3L:5554788-5556784 (-) // 100.0 //
Probeset : 1626745_at
Accessions : protein= NP_651963; /// NP_729076;, nucleotide= NM_143706; /// NM_168122;
Pathway : 0005811 // lipid particle // inferred from direct assay /// 0045244 // succinate-CoA ligase complex (GDP-forming) // inf
Interpro : 0003824 // catalytic activity // inferred from electronic annotation /// 0004776 // succinate-CoA ligase (GDP-forming) a
FlyMine data for FBgn0029118.
BDGP gene expression has embryonic in situ data for Sucb: 11 pix of staining in 8 body parts.
Homophila reports that CG10622 is a close match (1e-11) to human gene SUCLA2 (NP_003841), a gene associated with Mitochondrial DNA depletion syndrome, enceophalomyopathic form, with methylmalonic aciduria, 612073 (3).
BioGrid reports that CG10622 interacts with CG11486 CG3018 CG12393 CG10539 CG1034 CG11711 CG8823 CG17309 CG2102 CG32169 CG4244 CG6181 CG14215 .
VDRC has 2 RNAi stocks for FBgn0029118 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain73 ± 14 of 4 0.60Down
Head96 ± 54 of 4 0.80None
Eye75 ± 54 of 4 0.66Down
Thoracicoabdominal ganglion107 ± 54 of 4 0.90None
Salivary gland164 ± 114 of 4 1.42Up
Crop273 ± 54 of 4 2.40Up
Midgut240 ± 64 of 4 2.10Up
Tubule544 ± 194 of 4 4.70Up
Hindgut276 ± 74 of 4 2.40Up
Heart145 ± 34 of 4 1.26None
Fat body122 ± 44 of 4 1.06None
Ovary171 ± 84 of 4 1.50Up
Testis139 ± 64 of 4 1.20None
Male accessory glands119 ± 64 of 4 1.00None
Virgin spermatheca45 ± 44 of 4 0.39Down
Mated spermatheca53 ± 54 of 4 0.46Down
Adult carcass107 ± 64 of 4 0.90None
Larval CNS201 ± 164 of 4 1.75Up
Larval Salivary gland448 ± 244 of 4 3.88Up
Larval midgut445 ± 134 of 4 3.86Up
Larval tubule798 ± 224 of 4 6.90Up
Larval hindgut355 ± 114 of 4 3.07Up
Larval fat body1219 ± 1624 of 410.60Up
Larval trachea204 ± 414 of 4 1.77Up
Larval carcass139 ± 84 of 4 1.21None
S2 cells (growing)232 ± 64 of 4 2.02Up
Whole fly115 ± 94 of 4



Sucb (Sucb):

Annotation Number : CG10622
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0029118
Gbrowse : chr3L:5556037-5556784 (-) // 100.0 //
Probeset : 1635682_at
Accessions : protein= NP_651963; /// NP_729076;, nucleotide= NM_143706; /// NM_168122;
Pathway : 0005811 // lipid particle // inferred from direct assay /// 0045244 // succinate-CoA ligase complex (GDP-forming) // inf
Interpro : 0003824 // catalytic activity // inferred from electronic annotation /// 0004776 // succinate-CoA ligase (GDP-forming) a
FlyMine data for FBgn0029118.
BDGP gene expression has embryonic in situ data for Sucb: 11 pix of staining in 8 body parts.
Homophila reports that CG10622 is a close match (1e-11) to human gene SUCLA2 (NP_003841), a gene associated with Mitochondrial DNA depletion syndrome, enceophalomyopathic form, with methylmalonic aciduria, 612073 (3).
BioGrid reports that CG10622 interacts with CG11486 CG3018 CG12393 CG10539 CG1034 CG11711 CG8823 CG17309 CG2102 CG32169 CG4244 CG6181 CG14215 .
VDRC has 2 RNAi stocks for FBgn0029118 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain13 ± 14 of 4 2.40Up
Head7 ± 23 of 4 1.30None
Eye4 ± 11 of 4 0.75None
Thoracicoabdominal ganglion10 ± 22 of 4 1.80None
Salivary gland22 ± 51 of 4 4.00None
Crop11 ± 13 of 4 2.00Up
Midgut14 ± 14 of 4 2.50Up
Tubule7 ± 12 of 4 1.40Up
Hindgut14 ± 24 of 4 2.50Up
Heart2 ± 00 of 4 0.52None
Fat body3 ± 21 of 4 0.65None
Ovary7 ± 03 of 4 1.30None
Testis2 ± 11 of 4 0.30None
Male accessory glands8 ± 21 of 4 1.50None
Virgin spermatheca3 ± 11 of 4 0.65None
Mated spermatheca3 ± 00 of 4 0.69None
Adult carcass9 ± 21 of 4 1.70None
Larval CNS9 ± 14 of 4 1.69Up
Larval Salivary gland9 ± 02 of 4 1.63Up
Larval midgut7 ± 13 of 4 1.40None
Larval tubule25 ± 24 of 4 4.40Up
Larval hindgut8 ± 04 of 4 1.46None
Larval fat body78 ± 44 of 413.90Up
Larval trachea5 ± 12 of 4 0.93None
Larval carcass8 ± 04 of 4 1.56None
S2 cells (growing)22 ± 14 of 4 4.03Up
Whole fly5 ± 13 of 4



Sucb (Sucb):

Annotation Number : CG10622
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0029118
Gbrowse : chr3L:5556037-5556784 (-) // 100.0 //
Probeset : 1637251_a_at
Accessions : protein= NP_651963; /// NP_729076;, nucleotide= NM_143706; /// NM_168122;
Pathway : 0005811 // lipid particle // inferred from direct assay /// 0045244 // succinate-CoA ligase complex (GDP-forming) // inf
Interpro : 0003824 // catalytic activity // inferred from electronic annotation /// 0004776 // succinate-CoA ligase (GDP-forming) a
FlyMine data for FBgn0029118.
BDGP gene expression has embryonic in situ data for Sucb: 11 pix of staining in 8 body parts.
Homophila reports that CG10622 is a close match (1e-11) to human gene SUCLA2 (NP_003841), a gene associated with Mitochondrial DNA depletion syndrome, enceophalomyopathic form, with methylmalonic aciduria, 612073 (3).
BioGrid reports that CG10622 interacts with CG11486 CG3018 CG12393 CG10539 CG1034 CG11711 CG8823 CG17309 CG2102 CG32169 CG4244 CG6181 CG14215 .
VDRC has 2 RNAi stocks for FBgn0029118 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain67 ± 24 of 4 0.60Down
Head82 ± 84 of 4 0.70None
Eye79 ± 64 of 4 0.72Down
Thoracicoabdominal ganglion66 ± 64 of 4 0.60Down
Salivary gland150 ± 144 of 4 1.37None
Crop307 ± 414 of 4 2.80Up
Midgut149 ± 44 of 4 1.40Up
Tubule47 ± 34 of 4 0.40Down
Hindgut264 ± 234 of 4 2.40Up
Heart142 ± 144 of 4 1.29None
Fat body66 ± 234 of 4 0.61Down
Ovary215 ± 104 of 4 2.00Up
Testis125 ± 44 of 4 1.10None
Male accessory glands72 ± 24 of 4 0.70Down
Virgin spermatheca7 ± 11 of 4 0.07Down
Mated spermatheca11 ± 03 of 4 0.10Down
Adult carcass90 ± 54 of 4 0.80None
Larval CNS118 ± 44 of 4 1.08None
Larval Salivary gland216 ± 414 of 4 1.96None
Larval midgut149 ± 44 of 4 1.36Up
Larval tubule741 ± 294 of 4 6.70Up
Larval hindgut192 ± 104 of 4 1.75Up
Larval fat body1696 ± 2254 of 415.40Up
Larval trachea182 ± 214 of 4 1.66Up
Larval carcass72 ± 74 of 4 0.66Down
S2 cells (growing)445 ± 134 of 4 4.04Up
Whole fly110 ± 84 of 4

Looking for FBgn0029118. 3 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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