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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0029121 through 18771 annotations produced 1 hits



chr3L:5556779-5558203 (+) // 100.0 // (severas):

Annotation Number : CG4852
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : full length
Gbrowse : March 2006 (FlyBase/BDGP 5.3)
Probeset : 1623918_at
Accessions : protein= , nucleotide= NP_524673;
Pathway : 0006508 // proteolysis // non-traceable author statement
Interpro : 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane //
FlyMine data for full length.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain122 ± 14 of 4 1.00None
Head65 ± 34 of 4 0.50Down
Eye64 ± 34 of 4 0.53Down
Thoracicoabdominal ganglion117 ± 44 of 4 1.00None
Salivary gland205 ± 104 of 4 1.70Up
Crop116 ± 74 of 4 1.00None
Midgut278 ± 154 of 4 2.30Up
Tubule175 ± 104 of 4 1.50Up
Hindgut128 ± 54 of 4 1.10None
Heart117 ± 24 of 4 0.97None
Fat body148 ± 44 of 4 1.23Up
Ovary223 ± 74 of 4 1.90Up
Testis116 ± 34 of 4 1.00None
Male accessory glands176 ± 24 of 4 1.50Up
Virgin spermatheca142 ± 34 of 4 1.18Up
Mated spermatheca148 ± 74 of 4 1.23Up
Adult carcass94 ± 44 of 4 0.80Down
Larval CNS156 ± 64 of 4 1.30Up
Larval Salivary gland344 ± 74 of 4 2.85Up
Larval midgut319 ± 224 of 4 2.65Up
Larval tubule369 ± 44 of 4 3.10Up
Larval hindgut219 ± 54 of 4 1.82Up
Larval fat body182 ± 144 of 4 1.50Up
Larval trachea181 ± 154 of 4 1.51Up
Larval carcass173 ± 124 of 4 1.44Up
S2 cells (growing)465 ± 194 of 4 3.86Up
Whole fly120 ± 44 of 4

Looking for FBgn0029121. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime