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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0029123 through 18771 annotations produced 1 hits

soxneuro (SoxN):

Annotation Number : CG18024
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0029123
Gbrowse : chr2L:8825624-8829670 (+) // 100.0 //
Probeset : 1631408_at
Accessions : protein= NP_524735;, nucleotide= NM_079996;
Pathway : 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // inferred from sequence or structural similari
Interpro : 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription
FlyMine data for FBgn0029123.
BDGP gene expression has embryonic in situ data for SoxN: 39 pix of staining in 16 body parts.
Homophila reports that CG18024 is a close match (7e-18) to human gene SOX18;HLTS (NP_060889), a gene associated with Hypotrichosis-lymphedema-telangiectasia syndrome, 607823 (3).
BioGrid reports that CG18024 interacts with CG5893 CG5893 .
TRiP has 1 RNAi stocks for FBgn0029123 available for purchase.
VDRC has 1 RNAi stocks for FBgn0029123 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain790 224 of 434.30Up
Head169 224 of 4 7.30Up
Eye194 74 of 4 8.45Up
Thoracicoabdominal ganglion206 114 of 4 8.90Up
Salivary gland69 34 of 4 3.04Up
Crop7 23 of 4 0.30Down
Midgut1 00 of 4 0.00Down
Tubule2 00 of 4 0.10Down
Hindgut4 03 of 4 0.20Down
Heart5 11 of 4 0.23Down
Fat body22 64 of 4 0.96None
Ovary0 00 of 4 0.00Down
Testis3 03 of 4 0.20Down
Male accessory glands10 12 of 4 0.40Down
Virgin spermatheca29 24 of 4 1.30None
Mated spermatheca31 44 of 4 1.35None
Adult carcass10 04 of 4 0.50Down
Larval CNS936 1304 of 440.66Up
Larval Salivary gland304 224 of 413.23Up
Larval midgut4 12 of 4 0.21Down
Larval tubule4 11 of 4 0.20Down
Larval hindgut7 14 of 4 0.34Down
Larval fat body23 132 of 4 1.00None
Larval trachea49 74 of 4 2.16Up
Larval carcass58 44 of 4 2.53Up
S2 cells (growing)255 134 of 411.11Up
Whole fly23 24 of 4

Looking for FBgn0029123. 1 entries matched from 18771, in 2 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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