FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0029123 through 18771 annotations produced 1 hits

soxneuro (SoxN):

Annotation Number : CG18024
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0029123
Gbrowse : chr2L:8825624-8829670 (+) // 100.0 //
Probeset : 1631408_at
Accessions : protein= NP_524735;, nucleotide= NM_079996;
Pathway : 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // inferred from sequence or structural similari
Interpro : 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription
FlyMine data for FBgn0029123.
BDGP gene expression has embryonic in situ data for SoxN: 39 pix of staining in 16 body parts.
Homophila reports that CG18024 is a close match (7e-18) to human gene SOX18;HLTS (NP_060889), a gene associated with Hypotrichosis-lymphedema-telangiectasia syndrome, 607823 (3).
BioGrid reports that CG18024 interacts with CG5893 CG5893 .
TRiP has 1 RNAi stocks for FBgn0029123 available for purchase.
VDRC has 1 RNAi stocks for FBgn0029123 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	790 ± 22	4 of 4	34.30	Up
Head	169 ± 22	4 of 4	7.30	Up
Eye	194 ± 7	4 of 4	8.45	Up
Thoracicoabdominal ganglion	206 ± 11	4 of 4	8.90	Up
Salivary gland	69 ± 3	4 of 4	3.04	Up
Crop	7 ± 2	3 of 4	0.30	Down
Midgut	1 ± 0	0 of 4	0.00	Down
Tubule	2 ± 0	0 of 4	0.10	Down
Hindgut	4 ± 0	3 of 4	0.20	Down
Heart	5 ± 1	1 of 4	0.23	Down
Fat body	22 ± 6	4 of 4	0.96	None
Ovary	0 ± 0	0 of 4	0.00	Down
Testis	3 ± 0	3 of 4	0.20	Down
Male accessory glands	10 ± 1	2 of 4	0.40	Down
Virgin spermatheca	29 ± 2	4 of 4	1.30	None
Mated spermatheca	31 ± 4	4 of 4	1.35	None
Adult carcass	10 ± 0	4 of 4	0.50	Down
Larval CNS	936 ± 130	4 of 4	40.66	Up
Larval Salivary gland	304 ± 22	4 of 4	13.23	Up
Larval midgut	4 ± 1	2 of 4	0.21	Down
Larval tubule	4 ± 1	1 of 4	0.20	Down
Larval hindgut	7 ± 1	4 of 4	0.34	Down
Larval fat body	23 ± 13	2 of 4	1.00	None
Larval trachea	49 ± 7	4 of 4	2.16	Up
Larval carcass	58 ± 4	4 of 4	2.53	Up
S2 cells (growing)	255 ± 13	4 of 4	11.11	Up
Whole fly	23 ± 2	4 of 4

Looking for FBgn0029123. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720