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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0029128 through 18771 annotations produced 1 hits



trynity (tyn):

Annotation Number : CG17131
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0029128
Gbrowse : chrX:72457-95765 (+) // 99.96 //
Probeset : 1631714_a_at
Accessions : protein= NP_001027032; /// NP_001033815;, nucleotide= NM_001031861; /// NM_001038726;
Pathway : 0031941 // filamentous actin // inferred from direct assay /// 0045179 // apical cortex // inferred from direct assay
FlyMine data for FBgn0029128.
BioGrid reports that CG17131 interacts with CG18764 .
VDRC has 2 RNAi stocks for FBgn0029128 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain87 ± 64 of 4 5.40Up
Head14 ± 03 of 4 0.90None
Eye28 ± 24 of 4 1.73Up
Thoracicoabdominal ganglion46 ± 54 of 4 2.90Up
Salivary gland14 ± 30 of 4 0.90None
Crop7 ± 11 of 4 0.50Down
Midgut21 ± 34 of 4 1.30None
Tubule9 ± 32 of 4 0.60None
Hindgut57 ± 34 of 4 3.50Up
Heart30 ± 34 of 4 1.87Up
Fat body6 ± 50 of 4 0.37Down
Ovary15 ± 21 of 4 1.00None
Testis6 ± 13 of 4 0.40Down
Male accessory glands7 ± 30 of 4 0.50None
Virgin spermatheca14 ± 11 of 4 0.92None
Mated spermatheca16 ± 21 of 4 1.00None
Adult carcass5 ± 10 of 4 0.30Down
Larval CNS74 ± 44 of 4 4.59Up
Larval Salivary gland9 ± 12 of 4 0.56None
Larval midgut31 ± 24 of 4 1.96Up
Larval tubule18 ± 14 of 4 1.20None
Larval hindgut653 ± 534 of 440.49Up
Larval fat body9 ± 30 of 4 0.60None
Larval trachea17 ± 44 of 4 1.10None
Larval carcass49 ± 104 of 4 3.06Up
S2 cells (growing)3 ± 00 of 4 0.23Down
Whole fly16 ± 22 of 4

Looking for FBgn0029128. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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