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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0029134 through 18771 annotations produced 1 hits



20S proteasome (Prosbeta5):

Annotation Number : CG12323
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0029134
Gbrowse : chr2R:6707468-6708685 (+) // 100.0 //
Probeset : 1636559_s_at
Accessions : protein= NP_652014; /// NP_724974;, nucleotide= NM_143757; /// NM_165801;
Pathway : 0000502 // proteasome complex // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic
Interpro : 0004175 // endopeptidase activity // inferred from sequence or structural similarity /// 0004175 // endopeptidase activi
FlyMine data for FBgn0029134.
BioGrid reports that CG12323 interacts with CG3758 CG4279 CG14641 CG4216 CG6569 .
TRiP has 1 RNAi stocks for FBgn0029134 available for purchase.
VDRC has 3 RNAi stocks for FBgn0029134 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain555 ± 164 of 4 0.50Down
Head825 ± 484 of 4 0.70Down
Eye769 ± 124 of 4 0.68Down
Thoracicoabdominal ganglion535 ± 164 of 4 0.50Down
Salivary gland669 ± 254 of 4 0.59Down
Crop899 ± 144 of 4 0.80Down
Midgut853 ± 234 of 4 0.80Down
Tubule947 ± 554 of 4 0.80Down
Hindgut761 ± 34 of 4 0.70Down
Heart2388 ± 1294 of 4 2.10Up
Fat body1634 ± 884 of 4 1.44Up
Ovary1220 ± 154 of 4 1.10None
Testis275 ± 64 of 4 0.20Down
Male accessory glands919 ± 604 of 4 0.80Down
Virgin spermatheca584 ± 304 of 4 0.51Down
Mated spermatheca607 ± 504 of 4 0.53Down
Adult carcass1650 ± 484 of 4 1.50Up
Larval CNS1030 ± 534 of 4 0.91None
Larval Salivary gland1418 ± 584 of 4 1.25Up
Larval midgut1111 ± 1014 of 4 0.98None
Larval tubule1798 ± 224 of 4 1.60Up
Larval hindgut1063 ± 564 of 4 0.94None
Larval fat body988 ± 1164 of 4 0.90None
Larval trachea1384 ± 1704 of 4 1.22None
Larval carcass1742 ± 1684 of 4 1.53Up
S2 cells (growing)1163 ± 224 of 4 1.02None
Whole fly1137 ± 394 of 4

Looking for FBgn0029134. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime