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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0029137 through 18771 annotations produced 1 hits

Patsas (Patsas):

Annotation Number : CG6618
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0029137
Gbrowse : chr2L:12100761-12103285 (-) // 100.0 //
Probeset : 1635741_a_at
Accessions : protein= NP_723724;, nucleotide= NM_164993;
Interpro : 0005515 // protein binding // inferred from physical interaction /// 0008270 // zinc ion binding // inferred from electr
FlyMine data for FBgn0029137.
BDGP gene expression has embryonic in situ data for Patsas: 6 pix of staining in 1 body parts.
Homophila reports that CG6618 is a close match (1e-11) to human gene BARD1 (NP_000456), a gene associated with {Breast cancer, susceptibility to}, 114480 (3).
TRiP has 1 RNAi stocks for FBgn0029137 available for purchase.
VDRC has 1 RNAi stocks for FBgn0029137 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain212 64 of 4 9.40Up
Head74 34 of 4 3.30Up
Eye73 44 of 4 3.25Up
Thoracicoabdominal ganglion274 54 of 412.10Up
Salivary gland5 20 of 4 0.25Down
Crop5 10 of 4 0.20Down
Midgut5 10 of 4 0.20Down
Tubule3 00 of 4 0.10Down
Hindgut4 10 of 4 0.20Down
Heart2 00 of 4 0.12Down
Fat body2 20 of 4 0.10Down
Ovary31 14 of 4 1.40None
Testis6 11 of 4 0.30Down
Male accessory glands2 10 of 4 0.10Down
Virgin spermatheca4 10 of 4 0.18Down
Mated spermatheca1 00 of 4 0.07Down
Adult carcass10 41 of 4 0.50None
Larval CNS52 34 of 4 2.30Up
Larval Salivary gland2 10 of 4 0.12Down
Larval midgut7 10 of 4 0.31Down
Larval tubule4 10 of 4 0.20Down
Larval hindgut2 10 of 4 0.13Down
Larval fat body4 20 of 4 0.20Down
Larval trachea5 41 of 4 0.25Down
Larval carcass3 20 of 4 0.16Down
S2 cells (growing)9 00 of 4 0.42Down
Whole fly22 21 of 4

Looking for FBgn0029137. 1 entries matched from 18771, in 2 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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