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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0029167 through 18771 annotations produced 1 hits



hemolectin (Hml):

Annotation Number : CG7002
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0029167
Gbrowse : chr3L:13839153-13853113 (+) // 100.0 //
Probeset : 1628018_at
Accessions : protein= NP_524060;, nucleotide= NM_079336;
Pathway : 0005576 // extracellular region // inferred from direct assay /// 0005576 // extracellular region // inferred from elect
Interpro : 0005529 // sugar binding // inferred from sequence or structural similarity /// 0008061 // chitin binding // inferred fr
FlyMine data for FBgn0029167.
BDGP gene expression has embryonic in situ data for Hml: 4 pix of staining in 1 body parts.
Homophila reports that CG7002 is a close match (8e-15) to human gene F8;F8C;HEMA (NP_063916), a gene associated with Hemophilia A (3).
VDRC has 3 RNAi stocks for FBgn0029167 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain114 ± 54 of 4 1.70Up
Head305 ± 274 of 4 4.50Up
Eye69 ± 84 of 4 1.02None
Thoracicoabdominal ganglion50 ± 84 of 4 0.70None
Salivary gland17 ± 61 of 4 0.26Down
Crop21 ± 34 of 4 0.30Down
Midgut10 ± 20 of 4 0.20Down
Tubule12 ± 12 of 4 0.20Down
Hindgut8 ± 00 of 4 0.10Down
Heart1209 ± 334 of 417.79Up
Fat body39 ± 84 of 4 0.59Down
Ovary3 ± 10 of 4 0.10Down
Testis31 ± 14 of 4 0.50Down
Male accessory glands16 ± 11 of 4 0.20Down
Virgin spermatheca30 ± 14 of 4 0.45Down
Mated spermatheca31 ± 34 of 4 0.47Down
Adult carcass307 ± 194 of 4 4.50Up
Larval CNS10 ± 32 of 4 0.16Down
Larval Salivary gland11 ± 10 of 4 0.17Down
Larval midgut4 ± 30 of 4 0.07Down
Larval tubule39 ± 134 of 4 0.60None
Larval hindgut54 ± 64 of 4 0.80None
Larval fat body61 ± 164 of 4 0.90None
Larval trachea239 ± 414 of 4 3.51Up
Larval carcass495 ± 274 of 4 7.28Up
S2 cells (growing)469 ± 124 of 4 6.91Up
Whole fly68 ± 74 of 4

Looking for FBgn0029167. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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