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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0029172 through 18771 annotations produced 1 hits



Fad2 (Fad2):

Annotation Number : CG7923
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0029172
Gbrowse : chr3L:11016638-11017706 (+) // 100.0 //
Probeset : 1633820_at
Accessions : protein= NP_651966;, nucleotide= NM_143709;
Pathway : engulfment // inferred from mutant phenotype /// 0007619 // courtship behavior // inferred from mutant phenotype /// 00
Interpro : 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0016020 // membrane // inferred from electro
FlyMine data for FBgn0029172.
VDRC has 2 RNAi stocks for FBgn0029172 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 ± 10 of 4 0.00Down
Head7 ± 30 of 4 0.00Down
Eye0 ± 00 of 4 0.00Down
Thoracicoabdominal ganglion36 ± 281 of 4 0.00Down
Salivary gland1 ± 00 of 4 0.00Down
Crop8 ± 10 of 4 0.00Down
Midgut7 ± 20 of 4 0.00Down
Tubule93 ± 641 of 4 0.10Down
Hindgut27 ± 93 of 4 0.00Down
Heart5891 ± 3534 of 4 6.45Up
Fat body4516 ± 6484 of 4 4.94Up
Ovary4 ± 10 of 4 0.00Down
Testis2 ± 10 of 4 0.00Down
Male accessory glands4 ± 20 of 4 0.00Down
Virgin spermatheca3 ± 10 of 4 0.00Down
Mated spermatheca12 ± 61 of 4 0.01Down
Adult carcass4433 ± 384 of 4 4.90Up
Larval CNS3 ± 10 of 4 0.00Down
Larval Salivary gland2 ± 00 of 4 0.00Down
Larval midgut4 ± 10 of 4 0.00Down
Larval tubule2 ± 10 of 4 0.00Down
Larval hindgut6 ± 10 of 4 0.01Down
Larval fat body10 ± 30 of 4 0.00Down
Larval trachea1 ± 10 of 4 0.00Down
Larval carcass3 ± 10 of 4 0.00Down
S2 cells (growing)4 ± 20 of 4 0.01Down
Whole fly913 ± 1024 of 4

Looking for FBgn0029172. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime