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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0029175 through 18771 annotations produced 1 hits



ATP synthase coupling factor B /// sister of tout-velu (CG10731 /// Ext2):

Annotation Number : CG33038
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0029175 /// FBgn0034081
Gbrowse : chr2R:12033410-12037121 (-) // 100.0 //
Probeset : 1632041_s_at
Accessions : protein= NP_001027422; /// NP_725536; /// NP_725537;, nucleotide= NM_001032251; /// NM_166150; /// NM_166151;
Pathway : polysaccharide chain biosynthetic process // inferred from mutant phenotype /// 0015992 // proton transport // inferred
Interpro : coupling factor F(o) // inferred from sequence or structural similarity /// 0005783 // endoplasmic reticulum // inferre
FlyMine data for FBgn0029175 /// FBgn0034081.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain455 194 of 4 4.10Up
Head199 174 of 4 1.80Up
Eye131 04 of 4 1.20Up
Thoracicoabdominal ganglion491 94 of 4 4.50Up
Salivary gland76 64 of 4 0.70Down
Crop56 34 of 4 0.50Down
Midgut50 34 of 4 0.50Down
Tubule92 34 of 4 0.80Down
Hindgut49 14 of 4 0.40Down
Heart63 44 of 4 0.58Down
Fat body102 94 of 4 0.94None
Ovary223 164 of 4 2.00Up
Testis53 54 of 4 0.50Down
Male accessory glands114 24 of 4 1.00None
Virgin spermatheca81 34 of 4 0.74Down
Mated spermatheca81 44 of 4 0.74Down
Adult carcass50 64 of 4 0.50Down
Larval CNS230 384 of 4 2.10Up
Larval Salivary gland77 34 of 4 0.71Down
Larval midgut58 24 of 4 0.54Down
Larval tubule130 24 of 4 1.20Up
Larval hindgut75 34 of 4 0.69Down
Larval fat body98 84 of 4 0.90None
Larval trachea48 34 of 4 0.44Down
Larval carcass46 04 of 4 0.42Down
S2 cells (growing)74 34 of 4 0.68Down
Whole fly109 54 of 4

Looking for FBgn0029175. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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