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FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0029504 through 18771 annotations produced 2 hits



Checkpoint suppressor homologue (CHES-1-like):

Annotation Number : CG12690
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0029504
Gbrowse : chrX:7578919-7590727 (-) // 100.0 //
Probeset : 1629295_at
Accessions : protein= NP_511071; /// NP_996362;, nucleotide= NM_078516; /// NM_206639;
Pathway : DNA-dependent // inferred from sequence or structural similarity /// 0006355 // regulation of transcription
Interpro : DNA-dependent // inferred from electronic annotation /// 0006911 // phagocytosis
FlyMine data for FBgn0029504.
Homophila reports that CG12690 is a close match (8e-12) to human gene FKHL10;FOXI1;FREAC6 (NP_658982), a gene associated with Enlarged vestibular aqueduct, 600791 (3).
TRiP has 2 RNAi stocks for FBgn0029504 available for purchase.
VDRC has 2 RNAi stocks for FBgn0029504 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain506 154 of 4 3.70Up
Head132 84 of 4 1.00None
Eye379 624 of 4 2.81Up
Thoracicoabdominal ganglion410 214 of 4 3.00Up
Salivary gland156 464 of 4 1.15None
Crop242 64 of 4 1.80Up
Midgut166 54 of 4 1.20Up
Tubule259 114 of 4 1.90Up
Hindgut269 134 of 4 2.00Up
Heart437 444 of 4 3.23Up
Fat body333 784 of 4 2.46Up
Ovary244 44 of 4 1.80Up
Testis14 24 of 4 0.10Down
Male accessory glands258 104 of 4 1.90Up
Virgin spermatheca248 224 of 4 1.84Up
Mated spermatheca267 44 of 4 1.97Up
Adult carcass182 434 of 4 1.40None
Larval CNS137 264 of 4 1.01None
Larval Salivary gland170 154 of 4 1.26None
Larval midgut108 84 of 4 0.80Down
Larval tubule138 84 of 4 1.00None
Larval hindgut214 244 of 4 1.58Up
Larval fat body146 104 of 4 1.10None
Larval trachea422 914 of 4 3.12Up
Larval carcass136 104 of 4 1.01None
S2 cells (growing)133 34 of 4 0.99None
Whole fly135 44 of 4



Checkpoint suppressor homologue (CHES-1-like):

Annotation Number : S.CX000819
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0029504
Gbrowse : chrX:7583785-7584031 (-) // 93.18 //
Probeset : 1637670_s_at
Accessions : protein= NP_511071; /// NP_996362;, nucleotide= NM_078516; /// NM_206639;
Pathway : DNA-dependent // inferred from sequence or structural similarity /// 0006355 // regulation of transcription
Interpro : DNA-dependent // inferred from electronic annotation /// 0006911 // phagocytosis
FlyMine data for FBgn0029504.
TRiP has 2 RNAi stocks for FBgn0029504 available for purchase.
VDRC has 2 RNAi stocks for FBgn0029504 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain10 20 of 4 1.70None
Head6 20 of 4 1.00None
Eye10 21 of 4 1.71None
Thoracicoabdominal ganglion8 20 of 4 1.40None
Salivary gland19 80 of 4 3.18None
Crop10 40 of 4 1.60None
Midgut3 10 of 4 0.60None
Tubule2 00 of 4 0.40Down
Hindgut12 30 of 4 2.00None
Heart7 10 of 4 1.25None
Fat body4 40 of 4 0.76None
Ovary15 20 of 4 2.50Up
Testis3 20 of 4 0.50None
Male accessory glands10 30 of 4 1.70None
Virgin spermatheca1 00 of 4 0.27Down
Mated spermatheca2 00 of 4 0.37None
Adult carcass20 120 of 4 3.30None
Larval CNS4 30 of 4 0.72None
Larval Salivary gland7 10 of 4 1.12None
Larval midgut19 50 of 4 3.04None
Larval tubule3 00 of 4 0.60None
Larval hindgut11 20 of 4 1.75None
Larval fat body6 20 of 4 1.10None
Larval trachea3 20 of 4 0.57None
Larval carcass4 00 of 4 0.72None
S2 cells (growing)19 10 of 4 3.06Up
Whole fly6 10 of 4

Looking for FBgn0029504. 2 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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