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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0029506 through 18771 annotations produced 1 hits



tetraspanin 42E (Tsp42Ee):

Annotation Number : CG10106
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0029506
Gbrowse : chr2R:2899760-2905869 (+) // 100.0 //
Probeset : 1624907_at
Accessions : protein= NP_523631;, nucleotide= NM_078907;
Pathway : 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electron
FlyMine data for FBgn0029506.
BDGP gene expression has embryonic in situ data for Tsp42Ee: 25 pix of staining in 25 body parts.
BioGrid reports that CG10106 interacts with CG33141 .
VDRC has 1 RNAi stocks for FBgn0029506 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain596 ± 234 of 4 1.00None
Head935 ± 314 of 4 1.60Up
Eye1050 ± 674 of 4 1.83Up
Thoracicoabdominal ganglion453 ± 54 of 4 0.80Down
Salivary gland2500 ± 654 of 4 4.36Up
Crop1687 ± 334 of 4 2.90Up
Midgut270 ± 194 of 4 0.50Down
Tubule635 ± 744 of 4 1.10None
Hindgut1430 ± 304 of 4 2.50Up
Heart554 ± 164 of 4 0.97None
Fat body974 ± 1164 of 4 1.70Up
Ovary605 ± 284 of 4 1.10None
Testis382 ± 314 of 4 0.70Down
Male accessory glands1340 ± 674 of 4 2.30Up
Virgin spermatheca1225 ± 554 of 4 2.14Up
Mated spermatheca1338 ± 994 of 4 2.33Up
Adult carcass486 ± 114 of 4 0.80None
Larval CNS1720 ± 1364 of 4 3.00Up
Larval Salivary gland2200 ± 1874 of 4 3.84Up
Larval midgut270 ± 54 of 4 0.47Down
Larval tubule358 ± 154 of 4 0.60Down
Larval hindgut1773 ± 624 of 4 3.09Up
Larval fat body448 ± 194 of 4 0.80Down
Larval trachea1942 ± 1554 of 4 3.39Up
Larval carcass1848 ± 494 of 4 3.22Up
S2 cells (growing)2769 ± 404 of 4 4.83Up
Whole fly573 ± 324 of 4

Looking for FBgn0029506. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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