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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0029526 through 18771 annotations produced 2 hits



(CG18273):

Annotation Number : CG18166
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0029525 /// FBgn0029526
Gbrowse : chrX:374245-375612 (-) // 100.0 // /// chrX:377266-381140 (-) // 86.93 //
Probeset : 1628138_s_at
Accessions : protein= NP_569843;, nucleotide= NM_130487;
FlyMine data for FBgn0029525 /// FBgn0029526.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain103 ± 34 of 4 2.50Up
Head33 ± 14 of 4 0.80None
Eye33 ± 14 of 4 0.82None
Thoracicoabdominal ganglion85 ± 64 of 4 2.10Up
Salivary gland42 ± 52 of 4 1.04None
Crop33 ± 14 of 4 0.80None
Midgut28 ± 34 of 4 0.70None
Tubule14 ± 11 of 4 0.40Down
Hindgut30 ± 14 of 4 0.80None
Heart23 ± 14 of 4 0.58Down
Fat body25 ± 82 of 4 0.61Down
Ovary56 ± 24 of 4 1.40Up
Testis18 ± 14 of 4 0.50Down
Male accessory glands48 ± 34 of 4 1.20None
Virgin spermatheca8 ± 11 of 4 0.20Down
Mated spermatheca15 ± 12 of 4 0.37Down
Adult carcass29 ± 33 of 4 0.70None
Larval CNS62 ± 64 of 4 1.53Up
Larval Salivary gland40 ± 14 of 4 0.99None
Larval midgut11 ± 11 of 4 0.28Down
Larval tubule22 ± 13 of 4 0.60Down
Larval hindgut26 ± 24 of 4 0.65Down
Larval fat body19 ± 20 of 4 0.50Down
Larval trachea46 ± 94 of 4 1.15None
Larval carcass23 ± 14 of 4 0.57Down
S2 cells (growing)86 ± 14 of 4 2.12Up
Whole fly40 ± 44 of 4



(CG18273):

Annotation Number : CG18166
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0029526
Gbrowse : chrX:373895-375829 (-) // 100.0 // /// chrX:376383-381140 (-) // 82.8 //
Probeset : 1632896_at
Accessions : protein= , nucleotide=
FlyMine data for FBgn0029526.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain63 ± 24 of 4 9.20Up
Head16 ± 24 of 4 2.40Up
Eye16 ± 14 of 4 2.34Up
Thoracicoabdominal ganglion51 ± 24 of 4 7.50Up
Salivary gland10 ± 30 of 4 1.48None
Crop15 ± 23 of 4 2.20Up
Midgut14 ± 10 of 4 2.10Up
Tubule6 ± 00 of 4 1.00None
Hindgut7 ± 11 of 4 1.10None
Heart23 ± 04 of 4 3.36Up
Fat body15 ± 63 of 4 2.22None
Ovary5 ± 00 of 4 0.80None
Testis7 ± 00 of 4 1.10None
Male accessory glands10 ± 21 of 4 1.50None
Virgin spermatheca11 ± 12 of 4 1.62None
Mated spermatheca12 ± 23 of 4 1.85None
Adult carcass11 ± 20 of 4 1.70None
Larval CNS29 ± 44 of 4 4.28Up
Larval Salivary gland7 ± 20 of 4 1.07None
Larval midgut10 ± 01 of 4 1.57Up
Larval tubule9 ± 21 of 4 1.30None
Larval hindgut11 ± 04 of 4 1.71Up
Larval fat body12 ± 32 of 4 1.70None
Larval trachea8 ± 34 of 4 1.27None
Larval carcass8 ± 10 of 4 1.22None
S2 cells (growing)14 ± 04 of 4 2.03Up
Whole fly6 ± 10 of 4

Looking for FBgn0029526. 2 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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